>PF03186 (285 residues) ALALMLDFWLGDPRWLPHPVRGMGALIAFFDRRLNKGAYRRVKGMVTVTAVTGTVYIISL LAVKISYSLSWLFGVVVEAILIFTTIATKSLQEAAWNVLLPLERGDMEQARRELSMIVGR DTENLDEPEIVRACVETVAENTSDGITAPLFYAWIGGAPLALFYRAVNTCDSMLGYKNDT YRAFGWASARLDDVMNYIPARLTAAVMVFAHSGKRFRYCWRVLLRDARKHPSPNSGWPEA AMAALLGVRLGGTNTYHGVVSRRPTIGDPLVPLQTNHIRRALRIM |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | ALALMLDFWLGDPRWLPHPVRGMGALIAFFDRRLNKGAYRRVKGMVTVTAVTGTVYIISLLAVKISYSLSWLFGVVVEAILIFTTIATKSLQEAAWNVLLPLERGDMEQARRELSMIVGRDTENLDEPEIVRACVETVAENTSDGITAPLFYAWIGGAPLALFYRAVNTCDSMLGYKNDTYRAFGWASARLDDVMNYIPARLTAAVMVFAHSGKRFRYCWRVLLRDARKHPSPNSGWPEAAMAALLGVRLGGTNTYHGVVSRRPTIGDPLVPLQTNHIRRALRIM | |||||||||||||||||||
1 | 5gm6G | 0.09 | 0.08 | 2.97 | 0.88 | SPARKS-K | IFNRLLPILLD-RSLEDQERHLMIKTIDRVLYQLGDLTKPYVHKILVVAAPLLIVRSTGQEIITNLSTVAG---LKTILTVMRPDIDEYVRNVTSRAAAVVAKALGVNQLLPFINAACHSR----KSWKARHTGIKIVQQIGILLHLTGLMSCIKDCLVRIVTAHTLSTLAENSY--PYGIEVFNVVLEPLWKGIVLSSFLKAVGSMIPLMDPEYAGYYTTEAMRIIRREDDEMKKTILLVLQKCSAVE----------------------SITPKFLREFFQKF | |||||||||||||
2 | 5u1sA2 | 0.11 | 0.11 | 3.89 | 0.92 | FFAS-3D | ---LNLDMSKHLTTNLSKITLYINKWLQKSDEK-AERISSFEMDFVKMLLCYLNFKLSIELSLCIKSKEKYYIVPYADNYLLEAYLSLYMIDDALMMKNQLQKDSDLTAFQIYFGKTLINNDHNLPM----SLYIKVILLNIKIFNESAKLNIKAGNVISAVCRKAQNLALSLLKKKNKLSQGSRL---ALLKSLSFSFFQLIKI-HIRIGSARDCEFYSKELSRIISDLEEPIIVYRCLHFLHRYYMITEQTCLQNITLGKANKAFDAEADIEFVKLEQSLVLY | |||||||||||||
3 | 5tj5A | 0.12 | 0.07 | 2.50 | 0.30 | HHpred | SVCIVYKWAVDWVKDGKPAPGLLNMLINMFLSPGTDEHQAKVQVFLLLMALVCIPWLLLV---KPLHKFDIMIHQVIHT--IEFCLNCVS---HTASYLRLWA---LSLAHAQLSSVL----------------WTMTIQIAFRGFVGVFMTVALFAMWFALTCAVLVLMEGTS--------AMLH-SLRLH-WVESMSKPYEPFAFEYK--------------------------------------------------------------------------- | |||||||||||||
4 | 4xl5C | 0.15 | 0.12 | 4.01 | 0.72 | MUSTER | -------------------------KVEMYIKNLQDDSPPVRVYAAFALGKIGDERAVEPLIKAL----DEDASVRYAAATALGQIGD---ERAVEPLIKALKDEDGYVRTAAAEALGQIGDERAEDPWVRLTAARALGEIGDERAVEPLIKAL-----PWVRLTAARALGQIGD-----ERAVEPLIKALKD----ASVRKAAAVALGQIGD---ERAVEPLIKAL-KDEDE---YVRQRAASALG-KIGGERV-------RAAMEKLAEPAPGFARKVAVNYL | |||||||||||||
5 | 3rkoB | 0.09 | 0.08 | 3.18 | 1.04 | CNFpred | GLSLTMLSVV-----TGVGFLIHMYASWYMRGE-------EGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYDPKNGAAAMKAFVVTRVGDLAFALFILYNELGTDGNNMLMWATLMLLGGAVGKSAQ-TPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALAYSTMSQIGYMFLALGVAWDAAIFHLMTHAF------FKALLFLASGSVILACHHEQNI-------FKMGGLRK--SIPLVYLCFLVG | |||||||||||||
6 | 5tj5A | 0.11 | 0.07 | 2.52 | 0.66 | HHsearch-2 | SVCIVYKWAVDWVKDGKPAPGLLNMLINMFLSPGTDEHQAKVQVFLLLMALVCIPWLLLV---KPLHFFDIMIHQVIH--TIEFCLNCVS---HTASYLRLWA---LSLAHAQLSSVLW----------------TMTIQIAFRGFVGVFMTVALFAMWFALTCAVLVLMEGTS----------------------------------------AMLHSLRLHWVESMSK----PYEPFAFEYKDMEV------------------------------------- | |||||||||||||
7 | 1hz4A | 0.11 | 0.11 | 3.80 | 0.71 | Neff-PPAS | SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTKAAAANWLRHTNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLN-----------TLPELEQHRAQRILREI | |||||||||||||
8 | 2chvA2 | 0.18 | 0.03 | 0.92 | 0.22 | HHsearch | -----------------------------------------------------------------------------DADTI-YQITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGM------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
9 | 1w63C | 0.14 | 0.13 | 4.32 | 0.78 | SP3 | ILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLN-----------NDKNIRYVALTSLLKTVQTDHNAVQRHRSTIV--DCLKDLDVSIKRRAMELSFALVIRGMMKELLYFLD-SCEPEFKADCASGIFLAAEYAPSKRWHIDTIMRVLTTAGSYVRDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQ--PLVQVAAWCIG-------EYGDLLVSGQCEEEEPIQVTEDEVLDILESV | |||||||||||||
10 | 1hz4a | 0.11 | 0.10 | 3.58 | 0.89 | PROSPECTOR2 | TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKLMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQWARLDEAEASARSGIEVLSSYQPQQQLQRSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMAANWLRHTAKPEFANNHFLQGQWIVLEELNENARLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIIEGEAMAQQLRQL---------------------IQLNTLPELEQHRAQRIL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |