Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | KDHLTLLLGGNAAGDFKLKPLLVYPSENPRALRGCSKASLPVVWRSNRNDWLTPSIFQEWFTGCFCPAVESYCASHGLPHRALLLLDSAPCHPVHLGGLSAHVRVEFLPKNTSALIQPMNQGVIAAFKAHYLRRTLSQLVQETAGTDRPSVREFWRSYTVMTAVDNIAKAWAELQPATMNSAW |
1 | 5cr4A | 0.15 | 0.10 | 3.51 | 1.06 | HHpred | | GGSIMLWGCFAAGG--TGAL-------------------------HKIDGIMDAVQYVDILKQHLKTSVRKL----KLGRKWVFQHDNDPKHTSKVWLKDNKVKVLEWPSQS-PDLNPIE-NLWAELKKRVRAR---------------------RPTNLTQLHQLCQEEWAKIHPNYCGKLV |
2 | 5cr4A | 0.15 | 0.10 | 3.51 | 2.22 | HHsearch-2 | | GGSIMLWGCFAAGG---------------------------TGALHKIDGIMDAVQYVDILKQHLKTSVRKL----KLGRKWVFQHDNDPKHTSKVWLKDNKVKVLEWPSQS-PDLNPIE-NLWAELKKRVRAR---------------------RPTNLTQLHQLCQEEWAKIHPNYCGKLV |
3 | 5cr4A | 0.15 | 0.10 | 3.50 | 2.89 | HHsearch | | GGSIMLWGCFAAGG---------------------------TGALHKIDGIMDAVQYVDILKQHLKTSVRKL----KLGRKWVFQHDNDPKHTSKVWLKDNKVKVLEWPSQS-PDLNPIE-NLWAELKKRVRAR---------------------RPTNLTQLHQLCQEEWAKIHPNYCGKL- |
4 | 5cr4A | 0.15 | 0.10 | 3.32 | 1.12 | SAM | | -GSIMLWGCFAAGG----------------------------------DGIMDAVQYVDILKQHLKTSVRKLKL----GRKWVFQHDNDPKHTSKKWLKDNKVKVLEWPSQS-PDLNPIE-NLWAELKKRVRAR---------------------RPTNLTQLHQLCQEEWAKIHPNYCGKLV |
5 | 3hotA | 0.09 | 0.08 | 2.87 | 1.01 | HHpred | | ---------YVDPG-QPATSTARPNRFGKKTMLCVWWDQSGIYYELKPGETVNAARYQQQLINLNRALQRKR---PEYQHRVIFLHDNAPSHTARAVLETLNWEVLPHAAYSPD-LAPSDYHLFASMGHALAEQ---------------------RFDSYESVKKWLDEWFAAKDDEFYWRGI |
6 | 3hotA | 0.09 | 0.08 | 3.08 | 1.76 | HHsearch-2 | | HRIVTGDEKIFFVNPQPATSTARPNRFGKKTMLCVWWDQSGVIELLKPGETVNAARYQQQLINLNRALQR-KRP--EYQHRVIFLHDNAPSHTARATLETLNWEVLPHAAYS-PDLAPSDYHLFASMGHALAEQ---------------------RFDSYESVKKWLDEWFAAKDDEFYWRGI |
7 | 3hotA | 0.10 | 0.09 | 3.21 | 2.36 | HHsearch | | HRIVTGDEWIFDPG-QPATSTARPNRFGKKTMLCVWWDQSGVIELLKPGETVNAARYQQQLINLNRALQR-KRP--EYQHRVIFLHDNAPSHTARATLETLNWEVLPHAAYS-PDLAPSDYHLFASMGHALAEQ---------------------RFDSYESVKKWLDEWFAAKDDEFYWRG- |
8 | 3f2kA | 0.14 | 0.10 | 3.36 | 1.76 | HHsearch-2 | | PKKV-VTIWWSAAG-L-IH-----------------------YSFLNPGETITSEKYAQEIDE--NQKLQRL----QLRKGPILLHDNARPHVAQPKLNELGYEVLPHPPYS-PDLLPTNYHVFKHLNNFLQGK---------------------RFHNQQDAENAFQEFVESQSTDFYATGI |
9 | 3f2kA | 0.15 | 0.10 | 3.50 | 2.27 | HHsearch | | PKKV-VTIWWSAAG-------------------------LIHYSFLNPGETITSEKYAQEIDE-N-QKLQRL----QLRKGPILLHDNARPHVAQPKLNELGYEVLPHPPYS-PDLLPTNYHVFKHLNNFLQGK---------------------RFHNQQDAENAFQEFVESQSTDFYATG- |
10 | 3f2kA | 0.11 | 0.10 | 3.54 | 0.77 | SPARKS-K | | RRFEVSSSLILRNHNEPFLDRIVTCDEKWILYDNRHPKKV-VTIWWSAAGLITSEKYAQEIDEN------QKLQRLQLRKGPILLHDNARPHVAQPTLQKLGYEVLPHPPYS-PDLLPTNYHVFKHLNNFLAENAFQEFVESQSTD------------FYATGINQLISRWQKCVDCNGSYF- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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