>PF03082 (264 residues) MNQILLCSPILLLLFTVASCDSEQQLDSAMHLKSDSTKSASLKNVAPKNDETQAKIAKDD VALKDAKKGDYIMDIDISDLPLDDYPINRSKSLKSSSIDLNNIPFNKGLDDFPAKEKNQG SNQSALKALQQRLLTEQNNSLLLRNHSIYLMKEIEARKTDIIKVRQLNLDLELELNTVNR RLLELNGQLQNTRKSTKPCKKRSSKDSAPPAANQFQEANVRNTYRNKYLTLLKELSQKIN NEIAKVATDVPTETNPSQGNLPTL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | MNQILLCSPILLLLFTVASCDSEQQLDSAMHLKSDSTKSASLKNVAPKNDETQAKIAKDDVALKDAKKGDYIMDIDISDLPLDDYPINRSKSLKSSSIDLNNIPFNKGLDDFPAKEKNQGSNQSALKALQQRLLTEQNNSLLLRNHSIYLMKEIEARKTDIIKVRQLNLDLELELNTVNRRLLELNGQLQNTRKSTKPCKKRSSKDSAPPAANQFQEANVRNTYRNKYLTLLKELSQKINNEIAKVATDVPTETNPSQGNLPTL | |||||||||||||||||||
1 | 5yfpE | 0.10 | 0.10 | 3.75 | 0.80 | SPARKS-K | KQNYIQSVELIRRYNDFYSMGKSDIRLSKLILSSKLETSS-IPKTINTKLVIEKYSEMMENELLENFNSAYR-ENNFTKLNIILNNFNGGVNVIQSFINQHDYFIFIKNVKFKEQLIDFENHQNLINDVETVIKNESKIVKRATHVIQLFIQRVFAQKIEPRFEVLLRNSLSISNLAYVRILHGLFTLFGKFTKSLIDYFQLLEIDDSNQILSTTLEQCFADLFSGIEKRSLEAILVDMTSKFTVNYDKEINKRVLLDKYKEKL | |||||||||||||
2 | 3u0cA | 0.09 | 0.04 | 1.60 | 0.91 | FFAS-3D | -------------------------------------------------------------------------------------------------------------------------GEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPE--KKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSM---------------- | |||||||||||||
3 | 6f1tX2 | 0.14 | 0.05 | 1.54 | 0.45 | HHpred | ---------------------------------------------------------------------------------------------------------------------RLESLQAEIKMLSDRKRELEHRLSATLEENDLLQGTVEELQDRVLILERQGHDKDLQLHQSQLELQEVRLSYRQLQGGGGGGG---------------------------------------------------------------- | |||||||||||||
4 | 5nnvA | 0.12 | 0.10 | 3.59 | 0.98 | MUSTER | --------------------------------------------AKEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQLSNELTELKIAKEQACKGEEDNLARLKKELTETELALKEAKEDLSFTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEQKTTL | |||||||||||||
5 | 2j68A | 0.13 | 0.05 | 1.84 | 0.61 | CNFpred | --------------------------------------------------------------------------------------------------------------------------PKFMDSLNTFLTRERAIAEQVRTLARLACNHTREAVARRIPLLEQVNELKKRIDSVEPEFNKLTGIRDEFQKEI----------------INTRDTQAR-TISESFRSYVLNLGNTFENDFLRYQP---------------- | |||||||||||||
6 | 2pffB | 0.15 | 0.14 | 4.82 | 0.90 | HHsearch-2 | TRPLTLSDQVLNLCLEFENCYLEGQENDTLVKTKMAKRPFKKSNSALFRAVGEGNAQLVA-IFGGQGNTDDYFEELRDLYQTYHVLVGDLETLSAVFTQGLNILEW--LENPTPDKDYLLSIPISCPLIQLAHYVVTAKLLGFTPLRSYLKGASQGLVTAVAIAET--DSWESFFVSVRKAIT----VLF---FIGVRCYEAYPNTSLPPLENNLQQVQDYVNKTNSHLGLNLTLRK------AKALDQIPFSEKFSNRFLPVA | |||||||||||||
7 | 5nnvA | 0.11 | 0.09 | 3.39 | 1.16 | Neff-PPAS | ---------------------------------------------KEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEQKTTL | |||||||||||||
8 | 6f1tX2 | 0.15 | 0.06 | 1.92 | 0.65 | HHsearch | ------------------------------------------------------------------------------------------------------------------------QHIIRLESLQAEIKMLSDRKRELEHRLSATLEENDLLQGTVEELQDRVLILERQGHDKDLQLHQSQLELQEVRLSY-----------------R-------------------QLQGGGGG----GGGGGGGGGGGGGGGGGG- | |||||||||||||
9 | 4bjmA | 0.07 | 0.06 | 2.48 | 0.62 | SP3 | ------------------QPEFDRGFLRPFGAKMKFLKPDQVQKLST--DDLITYMAEKDKNVRDLAIKLRDA---KQDSTKNGTPEIKQKYDKAYEKTKAAAEKLVSEESLTRDALLELTEEQYVEKAAKDVYRNNLQRQTYERLLRSETDVSYREVARTFIAREGEPALNAKIERLALTLLYLAIAADFLKNQAN----------LHADDPELNLYKAETKAREIKANRAMKEALEGADKLFERNKILKSPDM--------- | |||||||||||||
10 | 3tnfB | 0.09 | 0.09 | 3.31 | 0.96 | PROSPECTOR2 | LDGKDLEDKYKTYEENLEGFEKLLTDSEELSSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEATKLLHKHNGLNLKLANLQDMLAVHRKEQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISK------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |