>PF03044 (320 residues) RNKLRNFLNNECLWVKNVACTSFTKVYCATTAVSPFFKPISPQGVPDKHYINVTLIILKP KKSHPYITVYINDLAVDCCSTEILQVKPVPCSHFSLIYFGPLIAPPHNVQIPANLSIKAS KKSHLTKNQVIFTSKVIHPERLPDGYKSASLIGACAWYSEGAIFQHFLSTDYMSLCPAFK EFPSLSRILSLLTRCDDLSCVPCYGEKIHVNCQSGYTDSDCDGKSNSCPCITSCTALKKD IVPITGHRNLLSLLFDATIQHNITSIKFFSPQTPTTVNNVFCGVLDTGETVECTCEAWNL LMFSDFISRQMIYNCQIMKR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RNKLRNFLNNECLWVKNVACTSFTKVYCATTAVSPFFKPISPQGVPDKHYINVTLIILKPKKSHPYITVYINDLAVDCCSTEILQVKPVPCSHFSLIYFGPLIAPPHNVQIPANLSIKASKKSHLTKNQVIFTSKVIHPERLPDGYKSASLIGACAWYSEGAIFQHFLSTDYMSLCPAFKEFPSLSRILSLLTRCDDLSCVPCYGEKIHVNCQSGYTDSDCDGKSNSCPCITSCTALKKDIVPITGHRNLLSLLFDATIQHNITSIKFFSPQTPTTVNNVFCGVLDTGETVECTCEAWNLLMFSDFISRQMIYNCQIMKR | |||||||||||||||||||
1 | 1w8nA1 | 0.05 | 0.04 | 2.09 | 0.80 | SPARKS-K | ALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDWGEQAGQTTAPIKGFSDPSYLVDRETGTIFNFHVYSQRQGF---AGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAASGEGIQLRYGPHA-----GRLIQQYTIINAAQAVSVYSDDHAGEAVGVGMDENKTVELVLLNSRDSARSGHSYGPVTINASIIRAFPDAPAGSARAKVLLFSNAASQTSRS-------QGTIRMSCDDGQT----WPVSKVFQPGSMSYSTLTALPDGTYGLLPGTGIRYANFNLAWLG----------- | |||||||||||||
2 | 2nn6C | 0.12 | 0.09 | 3.30 | 0.44 | FFAS-3D | LEYYRRFLKEN------CRPDGREGEFRTTTVNIGSI-----------------------STADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGK---------------LVWVLYCDLICLDYDGNILDCTFALLAALKNVQ--------------LPEVTINEETALAEVNL---------KKKSYLNIRTHPVATSFAVFDD-TLLIVDPTGEEEHLAT--GTLTIVMDEEGKLCCLHKPGGDCMSRAVTRHKEVK---KLMDE | |||||||||||||
3 | 4rkmA1 | 0.18 | 0.11 | 3.67 | 0.38 | HHpred | -------------------RSRHATTIRFPGEH-PENNKLNDPVDKDTAS------IL-PQGDVVYCTV---GHIRTKF---GFFDAWL---LRGTYHVELLKNGTG--QIVAGGNQWQRTWLNLSPEVA-KKIKKWVPDFPVTEYGDRGLASYAAKYKKSM--SFQASTSYCEVCPWKFDFKNESEFYAATIS-KGVSCEECHGAGGHLEGGSGLLDPHD---VTGNV---TGEKGIK---GVS-YNSEQGYL------------------------------------------------------------------ | |||||||||||||
4 | 6nb3A1 | 0.08 | 0.08 | 3.15 | 0.70 | MUSTER | VDVGPDSVKSACI--EVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGTTPQKLFVANYSQDVKQFFVVRIGAAANSTGTV-IISPSTSATIRKIYPAFMLGSSGNFSDGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNR----NASLNSFKEYFNLRNCTFMYT----ITEDEILEWFGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKSIIPHSIRSIQSDRKAWAAFYVYKLQPL---LLDFSVDYIRR | |||||||||||||
5 | 6eojA | 0.07 | 0.05 | 2.20 | 0.95 | CNFpred | -----------YILVTVS--RGDIKIFELEEKNKRKLLKVDLEILNEMVITSGLILKSNM-QEEQLLFTFVT------ADNQIIFFTKDHNDRIFQLNGVDQL------------------------NESLYISTYQLGDEIVP-DPSIKQVMINKLGHNKEEYLTILTFEIYQYRKLSRFYRNVTRNDLAITGAPDNAYAKGVSSERIMHYFPDY---------NGYSVIFVTG------------SVPYILIKEDDSTPKIFKFGN--------IPLVSVTPWSERSVMCVDDKNARVYTLTTNMYYGNKLPLKQIKI | |||||||||||||
6 | 1jmxG | 0.15 | 0.03 | 0.95 | 0.37 | HHsearch-2 | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVAGCTATTDPGWEVDAFGGVSSLCQPMEADLYGCSDPC-WPAQ--VPDMMDWRNLGTVFPKDK------------------------------------------------------------- | |||||||||||||
7 | 4eziA | 0.08 | 0.08 | 3.06 | 0.87 | Neff-PPAS | RETAEIALKKPPLDTLTVHYDLQLYKINYKTQSP------------DGNLTIASGLVAPIHVGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYTVPDYLGLGDNELTLHPYVQAETLASSSIDLFAAKENRLHYPISDKLYLAGYSTIVFESAVAPGSAPYGWEETHFVLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELDGYH----AVDEILQALPQDPLLIFQPKFSNGIISKTDEILKINFNHYDFKPTAEAYHSFRKYSDFVWIKSVSDALDHVQAHPFVLKEQVDFFKQFERQ | |||||||||||||
8 | 1aooA | 0.23 | 0.03 | 0.88 | 0.21 | HHsearch | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QNEGHECQC-QCGSCKNNEQCQKSCSCPTGCNSD---DKCPCGN---------------------------------------------------------------------------------------- | |||||||||||||
9 | 3osqA | 0.07 | 0.06 | 2.58 | 0.74 | SP3 | PYFTWPLIAADGGYAFKYENHLSHNVYIMADKQKNGIKIRHNIEDGGVQLAYHYQQNTPIGDGPVLLP----DNHYLSTQSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELYKGVSKGEELFTGVVPILVEL-------DGDVNGHKFSVSGEGEGDATYGKLTLKFICT-----TGKLPVP-----WPTLVTTLVQCFSRYPDHMKQHDFFKSAMPEGYIQERTI-------FFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNGGKYDIKDVGVDNAGAKL----TFLVDLIKNK--HMNA | |||||||||||||
10 | 1crua | 0.08 | 0.08 | 3.28 | 1.16 | PROSPECTOR2 | DVTPSQFAKAKGKILRVNPESGSVKTVFQVPEIVNDADGQNGPDFKNNPYIYISGTFKNPKSKELPNQTIISTDTLEKPVDLLAGLPSSKDHQSGRLVIGPYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGSIPKDNPSFNGVVSHIYTLNSDDEINLIVKGGNYGWPNGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQDTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITGWENTLLVPSLKRGVPMFKSNNRYRDVIASPTAGNVQKDDGSVTNT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |