>PF03043 (507 residues) PASPDAQLHFLKFNISSFMATWGWHGELVSLRRAIAHNVERLPTVLKNLSKQSKHQDVKV NGRDLVGFQLALNQLVSRLHVKIQRKDPGPKPYRVVVSTPDCTYYLVYPGTPAIYRLVMC MAVADCIGHSCSGLHPCANFLGTHETPRLLAATLSRIRYAPKDRRAAMKGNLQACFQRYA ATDARTLGSSTVSDMLEPTKHVSLENFKITIFNTNMVINTKISCHVPNTLQKTILNIPRL TNNFVIRKYSVKEPSFTISVFFSDNMCQGTAININISGDMLHFLFAMGTLKCFLPIRHIF PVSIANWNSTLDLHGLENQYMVRMGRKNVFWTTNFPSVVSSKDGLNVSWFKAATATISKV YGQPLVEQIRHELAPILTDQHARIDGNKNRIFSLLEHRNRSQIQTLHKRFLECLVECCSF LRLDVACIRRAAARGLFDFSKKIISHTKSKHECAVLGYKKCNLIPKIYARNKKTRLDELG RNANFISFVATTGHRFAALKPQIVRHA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | PASPDAQLHFLKFNISSFMATWGWHGELVSLRRAIAHNVERLPTVLKNLSKQSKHQDVKVNGRDLVGFQLALNQLVSRLHVKIQRKDPGPKPYRVVVSTPDCTYYLVYPGTPAIYRLVMCMAVADCIGHSCSGLHPCANFLGTHETPRLLAATLSRIRYAPKDRRAAMKGNLQACFQRYAATDARTLGSSTVSDMLEPTKHVSLENFKITIFNTNMVINTKISCHVPNTLQKTILNIPRLTNNFVIRKYSVKEPSFTISVFFSDNMCQGTAININISGDMLHFLFAMGTLKCFLPIRHIFPVSIANWNSTLDLHGLENQYMVRMGRKNVFWTTNFPSVVSSKDGLNVSWFKAATATISKVYGQPLVEQIRHELAPILTDQHARIDGNKNRIFSLLEHRNRSQIQTLHKRFLECLVECCSFLRLDVACIRRAAARGLFDFSKKIISHTKSKHECAVLGYKKCNLIPKIYARNKKTRLDELGRNANFISFVATTGHRFAALKPQIVRHA | |||||||||||||||||||
1 | 5i2aA | 0.09 | 0.07 | 2.58 | 1.01 | CNFpred | -------ETVLAIGLNGVKEKVR-YSTKMCFLESILISCDAVITYANRYAKMAEEMAEKERRQELLTIARVCKNVPE----------------------FPAESFQEACQSFWFIQQVLQIESSGHSISP-------------GRFDQYMYPYYEKDLKESLTREYAQELIDCIWVKLND------------------LNKCRDAAEGFAGYSLFQNLIVGGQTV-------GRDATNDLSFMCITASEHVFLPMPSLSIRVWHGS-------------SKALLMRAAELTR---TGIGLPAYYND---EVIIPALVHRGATMDEARNYNIIGCVEPQVP---GKTDGWHDAAFFNMCR----PLEMVFSNGYD-----NGEIASIQ-FQSFDEFMEAYRKQMLYNIELMVNADNAIDYAHALAPLPFESCLVDDCIKRG-----------MSAQEGGAIYNFTGPQGF--------GIANVADSLYTIKKLVFEEKRITMGELKKA | |||||||||||||
2 | 1vt4I | 0.17 | 0.15 | 5.02 | 1.31 | HHsearch-2 | QDMPKSILSKEEIDH-IIMSKWTLEEINYKFLMSPIKTEQRQPSMMTRMYIEQRNQVFKYNVSRLQPYLKLLLELRPAKNVLIDGVLGSGLSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--FNLS-CKILLTTRFKQVT-------DFLSAATTTHISLDHHSMTLTPLDCRPQDLPRLTTNPIAESIRDGLATWDN---WKHVNCDKLTT---IIESSLNVLKMFDRLSVFPPSAH-----IPTILLSLIWFVIKSDVMVVLHKYSLVEKQPKESTIS----IPSIYLE---LKVKLENEYALHRSIVDHYNPKTFDSDDLDQYFYSHIGHHLERMTLFRMVFLDFRFLEQKIRHDSTAWNASSILNTLQQL---KFYKPYICDNDPKYERLV-NA-ILDFLPKIEECSKYTDLL---RIALMAED----EAIFEEAHKQVQRGG | |||||||||||||
3 | 5mqfM | 0.07 | 0.07 | 2.96 | 1.01 | Neff-PPAS | -LPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSLCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILATKVNFKQVDDLASVWCQCGELELRHENYDEALRTALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGYDRILDLRIATPQIVINYAMF-LEEHKYFEESFKAYERGISLFKWPNV-SDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFC | |||||||||||||
4 | 3jb6B | 0.08 | 0.07 | 2.82 | 1.11 | PROSPECTOR2 | FAIDPLKHSKLYEEYGLYLRPHAPTIRSIKYASLIHSMLAKNPRMYADMITLGNTKVTDIVTYKALTEMSTLIESF---------RLPSGLALIIF--------------DDEKYQSLIPNYINQLIAYTQPHIIPTWQGIADFSDTYLRSYFKRPFELTASNLAAPQKYNLSPMTRSIFNNTGREDAVIRKLYGYGEYVFIRYEGCLITWTGIYGEVTMMVNLSKRDLGLDVGDDYLKEYKKLLFYGVITDAIPSTIMKISPHKMMNP-------SGGALAVLSKFLEAVVSTNVINATLVVYAEKGAGKTSFLSTYAEQLSLASGQVVGHLSSDAKNKDVEEPSFAYDY-----VLSLDTDDNESYYEQKASELLISHGIS---EVAQYELLSVRKKIKMMDEMNEVLIAQL---ENADTHSERNFYYMVSTGKTTFNAQDATIARTDTTVLLRT---INDTTQAMRDRQRGGVVQL-----FLRDTYYRLLPALHTTIRRWKWV | |||||||||||||
5 | 6oqqA | 0.14 | 0.13 | 4.50 | 0.74 | SPARKS-K | NSIPSQQIASHYLFLRSLANSETDKNQILSLAKPLGTYLASKPHVWKMINELIEKSEYPLKNNRAHFMLALIHEYH---------KEPLTKNQSAFVQKFRDSSVFLFP--NPIYTAWLAHS----YDEDSSFNPMFRERLSTNFHSTLTDNLLLRTE--PKEVTLSSEHHYK-----------KEKGPIDSSFRYQ-MSSDRLLRIQTLLFSTNDVVAVKVQ--KKGEPKSTLEEEFEMADYLRLDHSKLPQPLGQYSVKKIDDSKDLEVYVYKAPQSYFTYLLTASVKTNVHDLFVLLREGIVF-PQLADIFHTHFGEDEREDK-GRYQALVQLLNVLQFQLGRIDWQKAVEYVNLRSSGTSLFDFTKHYFSELLTGSGTANSLGKRRLFGNYLYLNTIAEYLLVIQLTLGSYGDKVTRDMKEAVWRELANVMLLKQRANIEKHFRQTQFWMTPIYSGEPEYSGVGLSVDGVHQD-LGGTVTLIEGTMQLDKEFFKQLEQVEKIL | |||||||||||||
6 | 5ijnC | 0.11 | 0.10 | 3.75 | 0.68 | FFAS-3D | -SSLDNIEMAYARQIYIYNEKIHLQPNLVDLCASVAKSISDMWTMVKQMTDVLVRMEFVRQALAYLEYKNYTLVTVFGLNIKLPAPLPGLQDGEV----EGHPVW------ALIYYCMRCLLAASQVVNRAQHQLGSKDRRLSPATENKLRLHYRRALRNNTDP----YKRAVYCIIGRCDVTDNQSEVADKTEDY--------LWLKLNQVCFDD------DGTSSPQDRLTLSQFQKQLLEDYGESHFTVPFLYFQVLFLTAQFEAAVAFLFRMERHAVHVALVLFELKLLLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSVIESREFDMILGENDGSRKP------GVIDKFTSKPIINKVASKLYDLAKNADKVLELMNKLLIAERYRAQGISANKFVDSTFYLLLDLITFFDEYDRAFDIIERLKLVPLNQESVEERVAAFR--NFSDEIRHNLSEVLLKGIEDRDSQLRSQARTLITFAGMIPYRTSTNARLVQ-- | |||||||||||||
7 | 1vt4I | 0.17 | 0.12 | 4.10 | 0.69 | HHpred | --ALDVCLSYKVQCKMDFKIFWLNLETVLEMLQKLL-----------YQIDPNWTSRSDHSKLRIHSIQAELRRLL--------KSKPYENCLLVLLNVQNAKAWNAFNLSCKIVTDFLSAATTTHISLDHHSRPQDLPREVLTTNPRRLSIIAESIRDLAT-WDNWKHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSV----------FPPSAHIPT--ILLSL-----IWFDVIKMVVVNKLHKYSLVEKQPKESTI-------------SIPSIYLELKVKENEYALHRSIVDHYNIPKT-F-DSDDL-------------------------------------------IPPYLDQYFYSHIGHHLKNIE----------------HPERMTLFRMVFLDFRFLEQKIRHDSTAWASGSILNTLQQL---KFYKPYICDNDPKYERLV-NA-ILDFLPKIEICSKYTDLL---RIALMAEDE----AIFEEAHKQVQRG- | |||||||||||||
8 | 3jb6B | 0.09 | 0.08 | 3.08 | 0.69 | MUSTER | IDPLKHSKLYEEYGL--YLRPHAPTKYASLIHSMLAKHAARHPRMYADMITLGNTK---VTDIVTYKALTEMSTLIESF------RLPSGLAL-IIFDDEKYQSLI--PNYINQLIAYT----------QPHIIPTWQGIADFSD--TYLRSYFKRP-FELTASNLAAPQKYNLSPMTRSIFNNTGREDAVIRKGYGEYVFIRYEGCLITWTGIYGEVTMMVNLSKRDLGLDVGDDYLKEYKKLLFYGVITDAIPSGISARST--MKISPHKMMNPSGGALAVLSKFLEAVVSTNVINATLVVYAEKGATSFLSTYAEQLSLASGQVDAYWLAK----NKDVEEPSFAYLSLDTDDNESYYEQKASELLISHVAQYELLSVRKKIKMMDEMNEVLIAQLENADTHSERNFYYMVSTGKTTPRTLIVEGHFNAQDATIDTT--VLLRTINDTTQAMRD--------------QRGGVVQL---FLRDTYYRLLPALHTTVPFEMLESI | |||||||||||||
9 | 1r8wA | 0.08 | 0.06 | 2.43 | 0.99 | CNFpred | -------GKVLRVGFNGIINEA-DFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNTSDAKRKAELNEIAKICS----------------KVSGEG--AKSFYEACQLFWFIHAIINIESNGHSISPA-------------RFDQYMYPYYENDKNI--TDKFAQELIDCIWIKLND------------------INKVRDEISTFGGYPMYQNLIVGGQNS-------GKDATNKVSYMALEAAVHVKLPQPSLSVRIWN----------KTPDEFLLRAAELTRE------GLGLPAYYND---EVIIPALVSRGLTLEDARDYGIIG---CVEPQKPGKTEGWHDSAFFNLAR----IVELTINSGFDKNKQIGPKTQNFEEMKSFDEFMKAYKAQMEYFVKHMCCADNCIDIAHARAPLPFLSSMVD-----------------NCIGKGKSLQDGGAEYNFS--GPQGVGVANIGDSLVAVKKIVFDENKITPSELKKT | |||||||||||||
10 | 1vt4I3 | 0.16 | 0.04 | 1.44 | 0.86 | HHsearch-2 | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EYALH-------RSIVDHYNIKTFDSDDLIPPYFYSHIGHHLEHPERMTLFRMVFLDFRFLEQKIRHDSNASSILNTLQ---QLKFYKPYICDNDPKYERLVNA--ILDFLPKIEENLICSKYTDLLRIALMAE----DEAIFEEAHKQVQRGG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |