>PF02956 (573 residues) MAWYWWRRRRRRGWWKPRRRRWRRRRARRRGPARRHRARRRVRRRRGRWRRRYRRWRRRG GRRRHRKKLIIKQWQPNFIRHCYIIGYMPLIICGENTFSHNYATHSDDMLSTGPYGGGMT TTKFTLRILFDEYQRHLNFWTVSNQDLDLARYLGTKIIFFRHPTVDFVVQIHTQPPFQDT EITAPSIHPGMLILSKKHILIPSLKTRPSKKHYVKVRVGAPRLFQDKWYPQSELCDVTLL VIYATACDLQYPFGSPQTDNVCVNFQILGQPYYQHLKTALGLTEKTTYENHYKNNLYKKI KFYNTTETIAQLKPLVDATTNQTWSHYVNPNKLTTTPTSEITHNNTWYRGNAYNDKITDL PEIVKKSYYKATELAIPEAVKPTTDLFEYHAGIYSSIFLSPGRAYFETPGAYQDIIYNPF TDKGIGNIVWIDWLSKSDAVYSEKQSKCGIFDLPLWAAFFGYAEFCSKSTGDTAIAYNSR VCVRCPYTEPQLLNHNNPSQGYVFYSYNFGKGKMPGGSSQVPIRMRWKWYVCMFHQLEVM EAICQSGPFAYHSDEKKAVLGIKYKFDWKWGGN |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MAWYWWRRRRRRGWWKPRRRRWRRRRARRRGPARRHRARRRVRRRRGRWRRRYRRWRRRGGRRRHRKKLIIKQWQPNFIRHCYIIGYMPLIICGENTFSHNYATHSDDMLSTGPYGGGMTTTKFTLRILFDEYQRHLNFWTVSNQDLDLARYLGTKIIFFRHPTVDFVVQIHTQPPFQDTEITAPSIHPGMLILSKKHILIPSLKTRPSKKHYVKVRVGAPRLFQDKWYPQSELCDVTLLVIYATACDLQYPFGSPQTDNVCVNFQILGQPYYQHLKTALGLTEKTTYENHYKNNLYKKIKFYNTTETIAQLKPLVDATTNQTWSHYVNPNKLTTTPTSEITHNNTWYRGNAYNDKITDLPEIVKKSYYKATELAIPEAVKPTTDLFEYHAGIYSSIFLSPGRAYFETPGAYQDIIYNPFTDKGIGNIVWIDWLSKSDAVYSEKQSKCGIFDLPLWAAFFGYAEFCSKSTGDTAIAYNSRVCVRCPYTEPQLLNHNNPSQGYVFYSYNFGKGKMPGGSSQVPIRMRWKWYVCMFHQLEVMEAICQSGPFAYHSDEKKAVLGIKYKFDWKWGGN | |||||||||||||||||||
1 | 2pffB | 0.15 | 0.11 | 3.83 | 1.07 | HHsearch-2 | ----------------------------------------------------------MDAYSTRPLTLSHGS-----LEHVLLVPTASFFIASQLQEQFNKILPEPT----EGF--AADDEPTTPAELVGKFLGYVSEPSQFDQVLNLCL--------TEFENCY---------------LEGNDIHAAKLLQENDTTLVKTKEL---IKNYITARIMAKRPFDKK------SNSALFRAVGEGNAQLVAIFGGQG-NT-DDYFEELRDLYQTYHVLVGDLIKFSA--ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVYTLRSYIAETDSWESFFSVRKAITVLFFIGVRCEAYPNTSLPLEDSLENNEGVPSP-MLSISNLTQEQVQDYVNK----------TNS--HLPAGKQEISLVNGAKNLVVSGPPQ--SLYGLNLTLRKAKAPSGLDQ-----SRIPFSERKLKF-----------SNRFLPVASPFHSHLVPNKDLVKNNVSFNAKDIISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA | |||||||||||||
2 | 3cm9S | 0.07 | 0.06 | 2.42 | 1.56 | Neff-PPAS | TRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKT---------ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW--------------------YWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKAD---AAPDEKVLDSGFREIENKAIQDPR----------------------------------------------- | |||||||||||||
3 | 3iz3A2 | 0.08 | 0.08 | 3.05 | 1.13 | PROSPECTOR2 | WHYTS---INNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSRSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYI--------------PADELIDNLHSWMRSVHLLHVRSED-NTLRYNWMLGVYARSTNYTTGQLVVNAPAILNYSNPQNSVFVALGIDYIDIPITNSNIFDDSSTPYMTEVNHILALMRKSTLVSTHSSWHWNVLHTFHYRSESDMIDHWLVEADRVIQRLIPLSGALYPNEFTENVLDLSRLSTALLQLSDTYYQHAN---------DQLRRLYRRMYNDSRTLRHQELLLAQITADPNILLYPYTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHD-----------TVADIVLGQTGEDVITISMVEPMIIPSIHTVIKGHSNTYSPGLFCGCVDVQSDSDDNLVNIEYQRYVPNGLGFKVRKTREFRYMHVTFIHKLMMYIREQISLTEVPLNMKYVVIDPFQFDAANMDLENNSIYLFIAMNEPNGAATPARMQMDKIREADVTLMLRSTPELIDACSNYGIRLGSTGGAVLDVFNHYSPVIKLVR- | |||||||||||||
4 | 5nd1B | 0.14 | 0.12 | 4.00 | 0.99 | SPARKS-K | MDWYSASAMETTTDRVRADYAGRMVVHSTLRKQTLRSRGTGDTTETENSGRYL---------------LALPTWKP------KLGGAGHALTAVMSEAGVGYITGVNGTRPHADTVFGREELVYLLGFALRHMADAQ-------EQVSLFRPAACSAHEWMN--VHGALMPKVSRPMSSSDLTGTAMAIYQAVLAYHHLFQYATTTYADG-----------VQMANK--------MVPPVNALAALGSSMDSFTGP----HCAYYFGLADAADGCFYSTTTSVYAVDVNHTSSDSYLAMAQLEPGLIATATGTGSTITTNVEGLVTEGHVSLYTTISAQWNGLQREVYEDSSHADGAEEVKSAVEWLSRFRSSAGLGATEAAGSPLHHYDGQIFS------NVIADTERHPYMRRLYTPSELRDARNRIWMRAQLQEDGG-RHQHSKAAAIGV-MGHGFTNLFAYCASTVHGGREAR-----LISNCTDTPMYKKNDLNSTSIGLSI-LGDGTMP--LQTVP------WTVTYLH---GIEAIIDT----------NGSVSVKVKMTMLEPRQ | |||||||||||||
5 | 6ahrB | 0.14 | 0.12 | 3.96 | 0.64 | FFAS-3D | ------QKSSNSLVFQTLPRHMRRRAMSHNVKRLPRRLQEIAQKEAEKAARRCHMNRTLEFNRRQKKNIWLETWHAKRFHMVKKWGY-CLGERPTVKSHRACYRAMTNRC--LLQDLSY-YCCLELKGKEEEILKALSGMCNIDTGLTFAAVRQGSLVLYRVNKYPVTFIWKSQRTPGDPSQLWIWLHPTLKQDILEEIKAACQCVGENAKPIKKI---IGDGTRDPCLPYSWISPTTGIIISDL-------------TMEMNRFRLLTEAIKAASVHTVGEDTEETPHRWWIETCKKPDSVSLHCRQEAIFELLGGITSPAEIPAGTDPRINLPQKKSKALPN---------PEKCQDNEKVRQLLLEGVPVECTHSFIWNQDICKSVTENKISDQDLNRMRSELLVPG-------SQLILGPHESKIPILLIQQPGKVTGEDRLGVLLPGMAFWIPFIGLKESAVHSQYKRSPNV--------PGDFP---------------------------DCPAGMLFAEE-------QAKNLLEKYKRRPPAKRPNYVKLGTLAPFCCPWE---- | |||||||||||||
6 | 3bh1D1 | 0.18 | 0.06 | 1.88 | 0.40 | HHpred | ------------------------------------------------------------DRGFLVEHVVLTQLENDVSRHRVIPGYMDRIVSDEGFGLNEYAETTRDLVVVAPGPGS-GKLATCLSQVYHEHKRGVAA-----------GY----------------AKFETFP-----IWNLPLEHPVNLAY------------------------------------------------EAATVDLND-------------ANVIDHFHLAAYGEQTV--NYNRDVEAFLKTLLERL-------M-G-ESPYQSPTDMGVN------------M--------A--GNCISDD--AACRHASRRYFKALVE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 2p1oB | 0.11 | 0.09 | 3.39 | 0.89 | MUSTER | EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR--------MVVTDDCLELIAKSFKNSSCEGFSTDGLAA---IAATC-----NLKELD-----RESDVDDVSGHW-LSHFPD-SLNISCLASFSALERLVTRCPLKLNRAVPLEKLATLLQRAPQEELGTGGYTAEVRPDVYS---GLSVALSG----------KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKIEDAGLEVLASTCKDLRELR--FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKSGLLTDKVFEYIGTYAMLSVAFAGDSDLG------MHHVLSGCDS-----RKLEIRDCPF-----ALLANASKLETMR------SLWMSCSVSFCKLLGQKMPKLNVEVIDER----GAPDSRPESCPVERVFIYRTV------------AGP-RFDMPGFVWNMDQ----------- | |||||||||||||
8 | 2x2hA | 0.06 | 0.04 | 1.64 | 0.93 | CNFpred | ---------------------------------------------------------------------NFDRID---NPSITVQHPVQVQVTSYNNNSYRVRFNPDGPIRD---VTRGPILKQQLDWIRTQELSEGCDPGMTFTSEGFLTFETKDLSVIIYG--NFKTRVTRKS--------------------DGKVIMENDEVGTSGNKCRGLMFVDRLYGNAIASVNKNFRQEGFYGAGEVNCKYDTYILER--TGIAMTNYNYDNLNYNQWDLRPPHH--GALNPDYYIPMYYAAPWLIVNGCAG---------------------------------------------------------------------------SEQYSYGWFMDNV------------SQSYMNTGDTTWNSGEDLAYMGAQY---------PFDQHFVY-GMEMVVTAFSLLQGKEFENQVLNKRSVMPPKYVF-----------GFFQGVFGTSSLLAHMPAGENNI-------------SVEEIVEGYQNNN--FPFE---GLAVDVDMQRVFTTKGE | |||||||||||||
9 | 2jwaA | 0.13 | 0.00 | 0.12 | 0.50 | HHsearch-2 | VFGILIKRRQQKI---R-----K---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 2cseB | 0.09 | 0.09 | 3.34 | 1.55 | Neff-PPAS | LRRMTSKDIDEPLVVVTEHAIANFTKAEMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNFQKQVPVITPTRQTMYVDSIQAALKALEKIDLRVAQTLLPTNVPIGEVSCPMQSVVKLLDDQLPDDSRYPKEAAVALAKRNGGIQWMDVSEGTVSALAPSASAPPLEEKSKLTEQAAEPEIIASLVPVPAPVFAIPPKPADYNVRTLKI---DEATWLRMIPKTMGTLFQIQVTDNTGTNWHFNLRGGTRVVNLDQIAPMRFVLDLGGKSYKETSWDPNGKKVGFI----------VFQSKIPFELWTAASQIGQATVVNYVQLYAEDSSFTAQSIIATTSLA-----------------YNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPDVWDALLTMSPLSAGEKGAVVSEVVPAELIGSYTPESLNASLPNDAARCMIDRASKIAEAIKIDDDAGPDE----YSPNSVPSQLETGYGVRIFNPKGILSKIASRAMQAFIGDPSTIITQAAPVLSDKNNWIALAQGVKTSLRTKSTAVSKLSSSESIQNWTQG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |