Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | AVTLLITAMVIFWAVPVAWTAALANIDKLTSIPWLRWIENNNTVYQIAGGVAGILPPLILALVLILVPILLDLLADFKGAKTGAQKTEFVQRFYFMFLFVQVFLVVSVASFFAGAADQLFANLQKFNEVDYIWTVLADNLPQAANYFFSYMILQALSSSSGALLQIGALLVWYVLAKMLDTTARNKWTRNTTLSGIKWGHLFPVYTNFACIGLIYSVTAPLINIFACITFGLLLLAQKYCLLYVVRAGIDTGGVLYPRAINQLFTGLYVMELSMAGMF |
1 | 5z1fA | 0.22 | 0.21 | 6.47 | 3.10 | SPARKS-K | | EPRQLLWQNLNIKLFSRIIRQYFIYFFVAVTIFYMIPIAFVSAITR--TVLESFLPQIALIVFLAMLPKLLLFLSKAEGIPSQSHAIRAASGKYFYFSVFNVFIGVTLAGTLF--------------NTDMIINLLATSLPKSATFFLTYVALKFFIGYGLELSRIIPLIIFHLKKKYLCKTEAEVK-EAWYPGDLSYATRVPGDMLILTITFCYSVIAPLILIFGITYFGLGWLVLRNQALKVYVPSYESYGRMWPHIHQRILAALFLFQVVMFGYL |
2 | 5z1fA1 | 0.20 | 0.18 | 5.87 | 2.79 | FFAS-3D | | GTSFVIFVILMLWMREALTSQDVVNLSGVDTAVHFVFL----------STVLGIFACSSLLLLPTLLPL------SMANITKKSSRLWAFLGAVYWISLVTYFFLWKAYKHVSSLRAQALM------SADMIINLLATSLPKSATFFLTYVALKFFIGYGLELSRIIPLIIFHLKKKYLCKTE-AEVKEAWYPGDLSYATRVPGDMLILTITFCYSVIAPLILIFGITYFGLGWLVLRNQALKVYVPSYESYGRMWPHIHQRILAALFLFQVVMFGYL |
3 | 5z1fA | 0.21 | 0.20 | 6.38 | 6.70 | HHpred | | EPRQLLWQNLNIKLFSRIIRQYFIYFFVAVILFYMIPIAFVS--AITRTVLESFLPQIALIVFLAMLPKLLLFLSKAEGIPSQSHAIRAASGKYFYFSVFNVFIGVTLAGTLFNT--------------DMIINLLATSLPKSATFFLTYVALKFFIGYGLELSRIIPLIIFHLKKKYLCKTEAEV-KEAWYPGDLSYATRVPGDMLILTITFCYSVIAPLILIFGITYFGLGWLVLRNQALKVYVPSYESYGRMWPHIHQRILAALFLFQVVMFGYL |
4 | 5z1fA | 0.21 | 0.20 | 6.38 | 2.44 | MUSTER | | EPRQLLWQNLNIKLFSRIIRQYFIYFFVAVTILFYMIPIA-FVSAITRTVLESFLPQIALIVFLAMLPKLLLFLSKAEGIPSQSHAIRAASGKYFYFSVFNVFIGVTLAGTLF--------------NTDMIINLLATSLPKSATFFLTYVALKFFIGYGLELSRIIPLIIFHLKKKYLCKTEAEVK-EAWYPGDLSYATRVPGDMLILTITFCYSVIAPLILIFGITYFGLGWLVLRNQALKVYVPSYESYGRMWPHIHQRILAALFLFQVVMFGYL |
5 | 3rkoC | 0.10 | 0.10 | 3.57 | 1.31 | CNFpred | | LAIDGLSLLMVVLTGLLGVLAVLCSWKEIEQGFFHLNLM--WILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLIAILALVFNYEELLNTPMSSGVEYLLMLGFFIAFAVKM-GWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNA-----------SAEFAPIAMWLGVIGIFYGAWMA-DIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERI |
6 | 5z1fA | 0.21 | 0.20 | 6.38 | 4.04 | HHsearch-2 | | EPRQLLWQNLNIKLFSRIIRQYFIYFFVAVILFYMIPIAFVS--AITRTVLESFLPQIALIVFLAMLPKLLLFLSKAEGIPSQSHAIRAASGKYFYFSVFNVFIGVTLAGTLFNT--------------DMIINLLATSLPKSATFFLTYVALKFFIGYGLELSRIIPLIIFHLKKKYLCKTEAEVK-EAWYPGDLSYATRVPGDMLILTITFCYSVIAPLILIFGITYFGLGWLVLRNQALKVYVPSYESYGRMWPHIHQRILAALFLFQVVMFGYL |
7 | 5yd1A2 | 0.13 | 0.12 | 4.24 | 2.15 | Neff-PPAS | | DIGVSAGINILTAFIFFIIFAFLRLQPFNDRVKFLHWMPEALKMPERELIDHAGLDSVVYLRIYWLGLKIFAPIAMLAWAVVNSNRFWAHIIMAYAFTIWTCYMLMKEYETVANMRLQFLASEGRKT--------IGMAIPMKATFFITYIMVDGWAGVAGEILMLKPLIIYHLKNAFE---------EAMNPGSIGFNTGEPQIQLYFLLGLVYAPVTPMLLPFILVFFALAYVVYRHQIINVYNQEYESAAAFWPDVHGRVITALIISQLLLMGLL |
8 | 5z1fA | 0.22 | 0.20 | 6.37 | 6.23 | HHsearch | | EPRQLLWQNLNIKLFSRIIRQYFIYFFVAVILFYMIPIAFVS--AITRTVLESFLPQIALIVFLAMLPKLLLFLSKAEGIPSQSHAIRAASGKYFYFSVFNVFIGVTLAGTLFNT--------------DMIINLLATSLPKSATFFLTYVALKFFIGYGLELSRIIPLIIFHLKKKYLCKTEAEV-KEAWYPGDLSYATRVPGDMLILTITFCYSVIAPLILIFGITYFGLGWLVLRNQALKVYVPSYESYGRMWPHIHQRILAALFLFQVVMFGY- |
9 | 5z1fA | 0.22 | 0.21 | 6.47 | 1.93 | PROSPECTOR2 | | GTSFVIFVILMLKLFSRIIRQYFIYFFVAVTIFYMIPIAFVSAI--TRTVLESFLPQIALIVFLAMLPKLLLFLSKAEGIPSQSHAIRAASGKYFYFSVFNVFIGVTLAGTL--------------FNTDMIINLLATSLPKSATFFLTYVALKFFIGYGLELSRIIPLIIFHLKKKYLCKTEAEVK-EAWYPGDLSYATRVPGDMLILTITFCYSVIAPLILIFGITYFGLGWLVLRNQALKVYVPSYESYGRMWPHIHQRILAALFLFQVVMFGYL |
10 | 5z1fA | 0.22 | 0.20 | 6.37 | 3.59 | SAM | | -PRQLLWQNLNIKLFSRIIRQYFIYFFVAVILFYMIPIAFVS--AITRTVLESFLPQIALIVFLAMLPKLLLFLSKAEGIPSQSHAIRAASGKYFYFSVFNVFIGVTLAGTLFNT--------------DMIINLLATSLPKSATFFLTYVALKFFIGYGLELSRIIPLIIFHLKKKYLCKTEAEV-KEAWYPGDLSYATRVPGDMLILTITFCYSVIAPLILIFGITYFGLGWLVLRNQALKVYVPSYESYGRMWPHIHQRILAALFLFQVVMFGYL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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