>PF02667 (447 residues) MISRVSRFMTTFVSKYLPDPLIFAVLLTFVTFICAWGLTDSTPVDLVNMWGNGFWNLLGF GMQMALIVVTGNALATSPQIRKFLSTIASIAKTPAQGVVLVTFMGSIACIINWGFGLVVG AMFAKEVARRIKGSDYALLIACAYIAFMTWGGGFSGSMPLLAATPGNPVAHLMMSESNPQ GIIPAVSTLFSGYNIFITLSLVICLPFITYMMMPKNGETKSIDPKLIAPDPTFDKKLDKD ATLAEKMEESRFLAYTIGALGYSYLGMYFYKNGFNLTINNVNLIFLITGIVLHGSPMAYM RAIINATRSTAGILVQFPFYAGVQLMMEHSGLGGLITEFFINVANKDSFPLLTFFSSAFI NFAVPSGGGHWVIQGPFVIPAAQALGADLGKSTMAIAYGEQWMNMAQPFWALPALGIAGL GVRDIMGFCMTALIFTAPIFIIGLYFL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MISRVSRFMTTFVSKYLPDPLIFAVLLTFVTFICAWGLTDSTPVDLVNMWGNGFWNLLGFGMQMALIVVTGNALATSPQIRKFLSTIASIAKTPAQGVVLVTFMGSIACIINWGFGLVVGAMFAKEVARRIKGSDYALLIACAYIAFMTWGGGFSGSMPLLAATPGNPVAHLMMSESNPQGIIPAVSTLFSGYNIFITLSLVICLPFITYMMMPKNGETKSIDPKLIAPDPTFDKKLDKDATLAEKMEESRFLAYTIGALGYSYLGMYFYKNGFNLTINNVNLIFLITGIVLHGSPMAYMRAIINATRSTAGILVQFPFYAGVQLMMEHSGLGGLITEFFINVANKDSFPLLTFFSSAFINFAVPSGGGHWVIQGPFVIPAAQALGADLGKSTMAIAYGEQWMNMAQPFWALPALGIAGLGVRDIMGFCMTALIFTAPIFIIGLYFL | |||||||||||||||||||
1 | 4r0cA | 0.17 | 0.16 | 5.28 | 2.59 | SPARKS-K | ---------------RLPHPTLLFVWFCLLLLPLTAVLGADGLRYLFTTLVGNFTGF-APLGVVLVAMLGLGVAEQSGLLSVSLASLVRRSSGG-ALVFTVAFAGVLSSLTVDA-GYVVLIPLAGLVFQLA-GRPPIAGIATAFAAVSGGFSANLLV-GPVDATLAGLSTEAAHIIDPDRTVAATGNY------WFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVDAPQIH-------SRAMKWTGLTLAILLAGLALLVSPFIHGLVVIVALIAGICGAVYGRVSGQNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLGALVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMFVLVLGFARTGIGTLIALMLPYSLTLLLGWSVLLGVW | |||||||||||||
2 | 4r0cA | 0.17 | 0.15 | 5.09 | 3.34 | FFAS-3D | ----------------LPHPTLLFVWFCLLLLPLTAVLDADGLRYLFTTLVGNFTGFAPLGVVLVAMLGLG-VAEQSGLLSVSLASLVRRSSGGALVFTVAFA--GVLSSLTVDAGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFSANLLVGPVDATLA---GLSTEAAHIIDPDRTV-----AATGNYWFIIASTFLVTGLVTLIT------RTLTEPRLAHANTVADASVDAPQIHSRAMKWTGLTLAILLAGLALLVLPPFIHGLVVIVALIAGICGAVYGRVSGQNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLGALVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMFVLVLGFAETGIGTLIALMLPYSLTLLLGWSVLLGV- | |||||||||||||
3 | 4r0cA | 0.22 | 0.20 | 6.23 | 4.39 | HHpred | ---------------RLPHPTLLFVWFCLLLLPLTAVLGADGLRYLFTTLVGNFTG---FALGVVLVAMLGLVAEQSGLLSVSLASLVRRSSGGA-LVFTVAFAGVLSSLTV-DAGYVVLIPLAGLVFQLA-GRPPIAGIATAFAAV---SGGFSANLLVGP-VDA-TLAG-LSTEA--AHIIDPDRTVAATGNYWFIIATFLVTGLVTLITRTLTERLAHANTVADAS---------VDAPQIHSRAKWTGLTLAILLAGLALLVL--PNDAPGGLVVIVALIAGICGAVYGRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLPKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMYFVVLGFARTGIGTLIALMLPYSLTLLLGWSVLLGVW | |||||||||||||
4 | 4r0cA | 0.19 | 0.17 | 5.64 | 1.93 | MUSTER | ---------------RLPHPTLLFVWFCLLLLPLTAVLGADGLRYLFTTLVGNFTGF-APLGVVLVAMLGLGVAEQSGLLSVSLASLVRRSSGG-ALVFTVAFAGVLSSLTV-DAGYVVLIPLAGLVFQLA-GRPPIAGIATAFAAVSGGFS-----ANLLVGPVDATLAGLSTEAAHIIDPRTVAATGNYWFIIASTFLVTGLVTLITRTLTEPR----------LAHANTVADASVDAPQIHSRAMKWTGLTLAILLAGLALLVSPFIHGLVVIVALIAGICGAVYGRVSGQNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLPKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLYFVLVLGFARTGIGTLIALMLPYSLTLLLGWSVLLGVW | |||||||||||||
5 | 5uldA | 0.09 | 0.08 | 2.99 | 2.21 | CNFpred | --------------------NVVLGISMLAFIAVLWLTEALHVTVTAILVPVMAVF-NSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKMSVAVLFGVTALLSMWISNTATAAMMLPLVLGVLSKV-DADKQRSTYVFVLLGVAYSASIGGIATLVGTGPNAIAAAEVG--------LSFTDWM--KFGLPTAMMMLPMAIAILYFLLKPTLNGMFELDRAPVNWD-----------------KGKVVTLGIFGLTVFLWIFSSPINGGFKSFDTLVALGAILMLSFVVHWKEIQKTA------DWGILLLFGGGLCLSNVLKQTGTSVFLANALSDMVSGIFVVILVVATFVVFLTEFTSNVATTTLLIPVFATVAEAFGMSPVLLSVLIAVAASCAFMLPTPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAMLF | |||||||||||||
6 | 4r0cA | 0.21 | 0.19 | 6.10 | 3.50 | HHsearch-2 | ---------------RLPHPTLLFVWFCLLLLPLTAVLGADGLRYLFTTLVGNFTG-FA-PLGVVLVAMLGGVAEQSGLLSVSLASLVRRSSGGA-LVFTVAFAGVLSSLTV-DAGYVVLIPLAGLVFQLA-GRPPIAGIATAFAAV---SGGFSANL--LVGPVDATLAG-LSTE--AAHIIDRTVAATGNYWIASTFLVTGLVTL---ITRTLTEPRLHANTVA-DA-------S-VDAPQIHSRAKWTGLTLAILLAGLALLV--LPNDAPLRHPHGLVLIAGICGRVSGRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLPKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMFVLVLGFARTGIGTLIALMLPYSLTLLLGWSVLLGVW | |||||||||||||
7 | 4r1iA | 0.13 | 0.12 | 4.29 | 2.64 | Neff-PPAS | ---GRFLRTVEWLGNMLPHPVTLFIIFIVLLLIASAVGAADGLIKILTHTVKNFTGF-APLGTVLVSLLGVGIAEKSGLISALMRLLLTKSPR-KLTTFMVVFTGILSNTASELGYVVLIPLSAVIFHSLGRHPLAGLAAAFAGVSGGYSANLFLGTIDPLLAGITQQAAQI----IHPDYVVGPEANWFFMAASTFVIALIGYFVTEKIVEPQLGPYQSDLSQEEK-------DIRHSNEITPLEYKGLIWAGVVFIALSALLAWSIVPADGILRIVVFIFLLFALPGIVYGRGEREVVNAMAESMSTLGLYLVIIFFAAQFVAFFNWTNIGQYIAVKGAVFLKESVLFIGFILICAFINLMIGSASAQWAVTAPIFVPMLMLAGYAPEVIQAAYRIGDSVTNIITPMMFGLIMATVMAGVGTLISMMLPYSAFFLIAWIALFCIW | |||||||||||||
8 | 4r0cA | 0.21 | 0.19 | 6.10 | 5.32 | HHsearch | ---------------RLPHPTLLFVWFCLLLLPLTAVLGADGLRYLFTTLVGNFTG-FA-PLGVVLVAMLGGVAEQSGLLSVSLASLVRRSSGGA-LVFTVAFAGVLSSLTV-DAGYVVLIPLAGLVFQLA-GRPPIAGIATAFAAV---SGGFSANL--LVGPVDATLAG-LSTEA--AHIIDRTVAATGNYWFI-IASTFLVTGLVTLITRTLTEPRLAANTVA-DA--------SVDAPQIHSRAKWTGLTLAILLAGLALLV--LPNDAPLRHPHGLVLIAGICGRVSGRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLPKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMFVLVLGFARTGIGTLIALMLPYSLTLLLGWSVLLGV- | |||||||||||||
9 | 4r0cA | 0.19 | 0.18 | 5.76 | 2.47 | PROSPECTOR2 | ---------------RLPHPTLLFVWFCLLLLPLTAVLGALDLRYLFTTLVGNFTGFAPLGVVLVAMLGLG-VAEQSGLLSVSLASLVRRSSGGA-LVFTVAFAGVLSSLTV-DAGYVVLIPLAGLVFQLA-GRPPIAGIATAFAA------VSGGFSANLLVGPVDATLAGLSTEAAHIIDPDRTVAATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVDAPQIH--------SRAMKWTGLTLAILLAGLALLVLPNDAPLRHPDVVIVALIAGICGAVQFRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWVPKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMFVLVLGFAETGIGTLIALMLPYSLTLLLGWSVLLGVW | |||||||||||||
10 | 4r1iA | 0.15 | 0.14 | 4.58 | 2.85 | SAM | ------LRTVEWLGNMLPHPVTLFIIFIVLLLIASAVGAADGLIKILTHTVKNFTG---FPLGTVLVSLLGVIAEKSGLISALMRLLLTKSPRK-LTTFMVVFTGILSNTASE-LGYVVLIPLSAVIFHSL-GRHPLAGLAAAFAGV---SGGYSANL--FLGTIDPLLAQQA------AQIVGPEANWFFM--AASTFVIALIGYFVTEKIEPQLGPQSDLS---QEE---------KDIRHSNEITPLEYKGLVVFIALSALLAWSID----GILRHSIFLLFALPGRITRRGEREVVNAMAESMSTLGLYLVIIFFAAQFVAFFNWTNIGQYIAVKGAVFLAGSVLFIGFILICAFINLMIGSASAQWAVTAPIFVPMLMLAGYAPEVIQAAYRIGDSVTNIITPMMFGLIMATVMAGVGTLISMMLPYSAFFLIAWIA----- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |