>PF02510 (336 residues) MGDVSAVSSSGNILLPQQDEVGGLSEALKKAVEKHKTEYSGDKKDRDYGDAFVMHKETAL PLLLAAWRHGAPAKSEHHNGNVSGLHHNGKSELRIAEKLLKVTAEKSVGLISAEAKVDKS AALLSSKNRPLESVSGKKLSADLKAVESVSEVTDNATGISDDNIKALPGDNKAIAGEGVR KEGAPLARDVAPARMAAANTGKPEDKDHKKVKDVSQLPLQPTTIADLSQLTGGDEKMPLA AQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGEFSLIPSNTQVEHRLH DQWQNGNPQRWHLTRDDQQNPQQQQHRQQSGEEDDA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MGDVSAVSSSGNILLPQQDEVGGLSEALKKAVEKHKTEYSGDKKDRDYGDAFVMHKETALPLLLAAWRHGAPAKSEHHNGNVSGLHHNGKSELRIAEKLLKVTAEKSVGLISAEAKVDKSAALLSSKNRPLESVSGKKLSADLKAVESVSEVTDNATGISDDNIKALPGDNKAIAGEGVRKEGAPLARDVAPARMAAANTGKPEDKDHKKVKDVSQLPLQPTTIADLSQLTGGDEKMPLAAQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGEFSLIPSNTQVEHRLHDQWQNGNPQRWHLTRDDQQNPQQQQHRQQSGEEDDA | |||||||||||||||||||
1 | 2blmA | 0.09 | 0.07 | 2.49 | 0.67 | SPARKS-K | -------------------------DDFAKLEEQFDAKLGDTGTNRTVAERFAFASTIKALTVGVLLQQKSIYTRDDLVNYNPITEKHVDTGMTL-KELADASLRYSDNA---------AQNLILKQIGGPE-----------SLKKELRKI-----GDEVTNPERFEPELNEVNPGE--TQDTSTARALVTSLRAFALEDKLPSEKRELLIDWMKRNTTGDAL--IRAGVPDGWEVADKTASYGTRNDIAIIWPPKGDPVVLAVLSSRDKKDA---------------KYDDKLIAEATKVVMKALNMNGK------------------------ | |||||||||||||
2 | 5fshA1 | 0.18 | 0.10 | 3.20 | 0.50 | FFAS-3D | -----------------------AMEDLDALWERYREAVRAGGNPQAL------YQEMVWPALLALWREKPRVYPFPQAFAV-SVHTLGTSPEATALAILGAGAER-VYVLHTPESARFLPRLRQDTGKDLYPVEIGKSDVE-AIYREVKRLLEK---HPEVPVALLTSGTKAMS---------------AGLAAAGFFFQRFYPK------------------VRVVYVDNEDYELRRPRAGTEKLRILP------------------------------------------------------------------------------------- | |||||||||||||
3 | 1b35C | 0.10 | 0.03 | 1.20 | 0.36 | HHpred | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKPTV-------QGKIGECKLRGQGRMANFDGMDMSHKMALSSTNEIETNEGLAGTSLDVMDLSRVLSIPNYWDRFTWKTSDINTNYVSPFCTHMGKNAFTYWRGSMVYTFK------------------------ | |||||||||||||
4 | 3tnfB | 0.12 | 0.12 | 4.20 | 0.61 | MUSTER | IKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLME-KHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVLKDAHLAINKDQEVVEHEGQFYKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLET--INNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRK-EKSFFNEKGEEVTS-LNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEEKQKKAEHDFHKQYETPMKLVHHNKGHKERVEETKQQLEDNGK | |||||||||||||
5 | 3zl8A | 0.15 | 0.08 | 2.71 | 0.52 | CNFpred | -----------------------SVDTLAKLAREKLGN-------FSGTVVGVTGKTTTKEILYNLLKN---------KRSVFKTPGNMNTEYGLPLSILNDYKGEEILVLEMAADIAHLCKIAPPDVAVLLNVG----SAHLEFFGTRERIMETK-----EIIKHSKENAIAVTLFD---------------------------------------------DPDLRKEV------------RYRNTLFFGKEG-----DSVLKDWWYYEGSTIAEFEAFDLFTVKLSG---------------------------------------------- | |||||||||||||
6 | 2pffB | 0.19 | 0.18 | 5.88 | 0.47 | HHsearch-2 | ---MDAYSTRPLTLSHGSLEHVLLVPTASFFI-ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGEPSKVGQFDQVLNTEFENCYLDIHLAAKLLVKTKELIKNYITARRPFDKKSSAVGEGNAQLVAIFTHVLVGDLISAETLSELIRTTLDAEKVFTQGLNPDKDYL--LSIPISCPLILRTGHSQGLTAVAIAETDSWESFFITVYEAYPNLPPSILEDSLENNEGVPSPMLSISNPAGKQVGAKNLVSGPPQSL-YGLTLRKAKAPSGLDQSRIPKFSPVASP-FHSHLLVSDLINKDLVKNNVSFNDIQIPVYDTLRVLSGSISDC | |||||||||||||
7 | 3tnfB | 0.10 | 0.10 | 3.70 | 0.84 | Neff-PPAS | IKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDEELSLSEINEKMEAFSKDSEKLTQLMEK--HKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMS--TDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKE-------QKILEKDGKFYLLKQGEDWESISPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIH | |||||||||||||
8 | 2n59A | 0.14 | 0.04 | 1.33 | 0.42 | HHsearch | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MV---QCEV-EAAVSGGHVTLQGVITAVRD--GAGSYKLAVDKAGAAGTSRIKQAGAFTAIAEQRVT---VGNVVLDYSSARYAARSFGSVTIQ---CNLDPTVKLE- | |||||||||||||
9 | 6aqyA | 0.13 | 0.11 | 3.94 | 0.41 | SP3 | SDQPITLTQDDVILV-----TGGFGKAVEHIVKKEQIKGKWVFLGSKDGD---LRDADACKQPFEKYRHLA-AFVMNFKVSF--WLDNVNMNNNILTCCYDFGVKKCVFPDKIEYPITEEKLHEGPPHFSNNAYAYAKRMLDMLGRWYNEKAVNE--GKSCLFTSVIPT---NLFGPHDNFNVE--AGHVLPGLMHKCYKAQQNGTDFVVFGSGKPL-RQFLYSHDAARM------LLWTMFNYQSEEPIMLC---VSEEDEKSIGKDAFNFTGNMVFDTSKADGYKKTSSNA----KFLRLN--PTFQYTPF-EQKETVQWFLENYETARK---- | |||||||||||||
10 | 3tnfB | 0.10 | 0.09 | 3.43 | 1.07 | PROSPECTOR2 | LDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANL---------QVLHDAHTGKKSYVNEKGNPVSS----------LKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKAVHRKEKSFFNEKGEEVTSLGKDQQLFNLGGKFYPQKILEKDGKFYLLKQGEDWESKAEHDFHKLQYETPMTVKKKQQLEDNGKEKIEIANNISK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |