>PF02487 (388 residues) AFFGLGSLINITFSLVTAATQDILAETYFPTSTVLIADTLPAFLVSLIVPYFMQRIPYVG RIALVYLLNVSALIMLALVKQLYWKLIGVVMISFAASACEVTVLSLTSFHGELTLTAFSA GTGVGFAVGPLYYTAMTTWACISPKATHCIMAAMMVLIFVCYYATGNSVSKPPTYLTAEH VGVRLLALNTDAHNVYDTSNEDYDEIGEDTSLSRRQKFTVIRQMLPQMIPIFFTFFAQYF IIQAVVTTLAFPSCSFSPSDHYEYYILVFMVGEVVGRSYLGVLSCIKEDWGDKAKFPYPW IMCLVQIMDLLFLVLAAWYRFLSSVWIVLLLVFISGVVVGAFYVNTVIFFRNCFQERYRE FAMGYIIVGLHAGVLTAAMLGLYIEPLL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | AFFGLGSLINITFSLVTAATQDILAETYFPTSTVLIADTLPAFLVSLIVPYFMQRIPYVGRIALVYLLNVSALIMLALVKQLYWKLIGVVMISFAASACEVTVLSLTSFHGELTLTAFSAGTGVGFAVGPLYYTAMTTWACISPKATHCIMAAMMVLIFVCYYATGNSVSKPPTYLTAEHVGVRLLALNTDAHNVYDTSNEDYDEIGEDTSLSRRQKFTVIRQMLPQMIPIFFTFFAQYFIIQAVVTTLAFPSCSFSPSDHYEYYILVFMVGEVVGRSYLGVLSCIKEDWGDKAKFPYPWIMCLVQIMDLLFLVLAAWYRFLSSVWIVLLLVFISGVVVGAFYVNTVIFFRNCFQERYREFAMGYIIVGLHAGVLTAAMLGLYIEPLL | |||||||||||||||||||
1 | 6e9nA | 0.10 | 0.10 | 3.51 | 2.55 | SPARKS-K | MIFITVVICYVDRANLAVASAHIQEEFGITKAEMGYVFSAFAWLYTLCGGWFLDRVGSRVTYFIAIFGWSVATLFQGFATGLMSLIGLRAITGIFEAPAFPTNNRMVTSWEHEAVGFYTSGQFVGLAFLTPLLIWIQEML--SWHWVFIVTGGIGIIWSLIWFKVYQPPRLTKGISK------AELDYIRDGGGLVDGDAPLT-----------AKDWKLVFH--RKLIGVYLGQFAVASTLWFFFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWVADLLVRKGFSL-----GFARKTPIICGLLISTCIMGANYTNDPMMIMCLMALAFFGNGFA-SITWSLVSSLAPMRLIGLTGGVFNFAGGLGGITVPLVVGYLAQGY | |||||||||||||
2 | 1pv6A | 0.10 | 0.09 | 3.41 | 1.82 | FFAS-3D | -FFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLLVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGINNQFVFWLGSGCALILAVLLFFAKTDAPSSA------------------------TVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFF--TSFFATGEQGTRVFGYVTTMGELLNASIMFFAP---------LIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFFFKQLAMIFMSVLAGNMYESI | |||||||||||||
3 | 1pw4A | 0.10 | 0.09 | 3.40 | 1.16 | HHpred | GIFFGYAAYYLVRKNFALAMPYL-VEQRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVSSIAVMFVLLFLCGWFQGMGWPPCGRTMVWWSQGIVSVWNCAHNVGGGIPPLLFLLGMAW-FNDWHAALYMPAFCAILVALFAFAMM----RDTPSCGL-----P----PIE-----EY------KNDTAKQIFMQYVL-PNKLLWYIAIANVFVYLLRYGILDW--SPTYLKEKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMS-------DKVRGNR-GATGVFFMTLVTIAT--IVYWMNPAPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGSVAAAIVGYTVDFF- | |||||||||||||
4 | 4cl4A | 0.11 | 0.11 | 3.96 | 1.79 | MUSTER | MILCIEAVERLTTLGIGVLVTYLTGTMHLGAANTVTNFLGTSFMLCLLGGFIADTFLRYLTIAIFAAIQATGVSILTLSTILTVLYLALYLTALGTGGVKASVSGFGSQFDETFFNRFFFCINVGSLLAVTVLVYVQDDV--GRKWGYGICAFAIVLALSVFLAGTNRYRFKKLI----------GSPMTQVAAVIVAAWRNRKLETLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAILFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRHGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFT | |||||||||||||
5 | 3rkoB | 0.10 | 0.08 | 2.89 | 1.69 | CNFpred | SLTMLSVVTGVGFLIHMYASWYMR----GEEGYSRFFAYTNLFIASMVVLVLADN--LLLMYLGWEGVGLCSYLLIGFYKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMV-WATLMLLGGAVGKSAQQTWLADAGPTPVSALIHAATMVTAGVYLIAR--------------------------------------------------THGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQ------TDIKRVLAYSTMSQIGYMFLALGVQAWDAA-----------IFHLMTHAFFKALLFLASGSVILAC-PLVYLCFLVGGAALSATAGFFSKDEILAGAMAGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQ | |||||||||||||
6 | 3o7pA | 0.12 | 0.11 | 3.79 | 0.93 | HHsearch-2 | LFFLWAVANNL----NDILLPQFQQAF-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVGPEFRLNLAQTFASFGAIIAVVFGQSLILSNVLSVQTPYMIIVAIVLLVALLIM-LT----KFPALQSD----------NHSD----------A--K----QGSFSASLRLARHWRWAVLAQFCYVGAQTACWSYL-IRYAVEEPGMT-AGFAANYLTGTMVCFFIGRFTGTWLI-------SRFAPHK--VLAAYALIAMALCLI---SAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAI | |||||||||||||
7 | 6e9nA | 0.10 | 0.09 | 3.44 | 2.26 | Neff-PPAS | MIFITVVICYVDRANLAVASAHIQEEFGITMGYVFSAFAWLYTLCQIPGGWFLDRVGSRVTYFIAIFGWSVATLFQGFATGLMSLIGLRAITGIFEAPAFPTNNRMVTSWFASAVGFYTSGQFVGLAFLTPLLIWIQEML--SWHWVFIVTGGIGIIWSLIWFKVYQPPRLT----------------KGISKAELDYIRDGGGLVDGDAPLTAKDWKLVFHRKLIGVYLGQFAVASTLWFFLTWFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWVADLLVRKGFSLGFARKTPIICGLLISTCIMGANYT------NDPMMIMCLMALAFFGNGFASITWSLVSSLAPMRLIGLTGGVFNFAGGLGGITVPLVVGYLAQGY | |||||||||||||
8 | 3o7pA | 0.13 | 0.11 | 3.86 | 1.42 | HHsearch | LFFLWAVAN----NLNDILLPQFQQAF-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVGPEFRLNLAQTFASFGAIIAVVFGQSLILSNVLSVQTPYMIIVAIVLLVALLIM-LT----KFPALQSD----------NHS-----DA-------K----QGSFSASSRLARHWRWAVLAQFCYVGAQTACWSYL-IRYAVEEPGMT-AGFAANYLTGTMVCFFIGRFTGTWLI-------SRFAPHK--VLAAYALIAMALCLI---SAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIVMTIIGGGIVTPVMGFVSDAA- | |||||||||||||
9 | 4cl4A | 0.12 | 0.12 | 4.10 | 1.51 | PROSPECTOR2 | RAMILCAVERLTTLGIGVNLVTYLTGTNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIAAIQATGVSILTLGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDEFFNRFFFCINVGSLLAVTVLVYVQD--DVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPM-----------TQVAAVIVAAWRNRKLETLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFT | |||||||||||||
10 | 1pw4A | 0.10 | 0.09 | 3.14 | 0.70 | SAM | --FFGYAAYYLVRKNFALAMPYL-VFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMM----RDTPSCGLPPI--------------------------------FMQYVLPNKLLWYIAIANVFVYLLRYGILDWS-PTYLKEV--KFALDKSSWAYFLYEYAGIPGTLLCGWMS---------DKVGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGSVAASAIV------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |