Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | SGVHLQRYVRATAGRWLPLCWPPLHGIMLGDTQYFGVVRDHKTYRRFSCLRQAGRLYFIGLVSVYECVPDANTAPEIWVSGHGHAFAYLPGEDKVYVLGLSFGEFFENGLFAVYS |
1 | 3d5pA | 0.09 | 0.08 | 2.97 | 1.00 | SPARKS-K | | LPKQYKSFLLWSNGGEGKLG---DNYIYIWAIEDVIAYNHDYGIQKYL----QKEYWAFG----------DGDIGYILHLSDNSIYRVDLGDLDIKYIAPSFDDFLGKAIYLNFN |
2 | 3d5pA | 0.08 | 0.07 | 2.72 | 1.08 | Neff-PPAS | | -PKQYKSFLLWSNGGEGKLG---DNYIYIWAIEDVIAYNHDYGIQKYL----QKEYWAFGDG----------DIGYILHLSDNSIYRVDLDITSIKYIAPSFDDFLGKAIYLNFN |
3 | 2prvA | 0.12 | 0.10 | 3.67 | 0.77 | SPARKS-K | | LPNSYKWFLEKYGAGGLF-----GVLVLGYNFDHASVVNRTNEYKEHYGLTDG-----LVVIEDVDYF-------AYCLDGECPVVEWDRVIGYQDTVADSFIEFFYNKIQEAKD |
4 | 3ffvA | 0.11 | 0.10 | 3.45 | 0.56 | FFAS-3D | | -DIVIQPTIHTFYTTQFAGDMHGDIKLTLSEDDFRRVQENLIGHLVTQKRLKLPPTLFIAT-------LEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQ------- |
5 | 3d5pA | 0.08 | 0.07 | 2.73 | 0.39 | HHpred | | LPKQYKSFLLWSNGGEGKLGD---NYIYIWAIEDVIAYNHDYGIQKYL--QK--EYWAFG----D-G----D-IGYILHLSDNSIYRVDLDITSIKYIAPSFDDFLGKAIYLNFN |
6 | 3d5pA | 0.08 | 0.07 | 2.71 | 0.89 | MUSTER | | N-KQYKSFLLWSNGGEGKLG---DNYIYIWAIEDVIAYNHDYGIQKYL----QKEYWAFGD-----------DIGYILHLSDNSIYRVDLDITSIKYIAPSFDDFLGKAIYLNFN |
7 | 3d5pA | 0.09 | 0.08 | 2.95 | 0.93 | CNFpred | | LPKQYKSFLLWSNGGEGKLG---DNYIYIWAIEDV-----IAYNHDYGIQK-QKEYWAFGMDG---------DIGYILHLSDNSIYRVDLG-TSIKYIAPSFDDFLGKAIYLNFN |
8 | 3d5pA | 0.09 | 0.08 | 2.94 | 0.57 | HHsearch-2 | | LPKQYKSFLLWSNGGEGKLG---DNYIYIWAIEDVIAY--NHDYGKYL--QK--EYWAFG----D---G--D--IGYILHSDNSIYRVDLGITSIKYIAPSFDDFLGKAIYLNFN |
9 | 3ffvA | 0.08 | 0.08 | 3.05 | 0.86 | Neff-PPAS | | -QPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATL----EEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPLL-- |
10 | 3d5pA | 0.10 | 0.08 | 2.93 | 0.68 | HHsearch | | LPKQYKSFLLWSNGGEGKLG---DNYIYIWAIEDVIA--YNHDYGKYL--QK--EYWAFG----D---G--D--IGYILHSDNSIYRVDLGITSIKYIAPSFDDFLGKAIYLNF- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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