>PF02007 (305 residues) REQMVVEIAGRKIGGQPGEYPTALAGTIFYARHKIVEDERKGIFDKAAAEDLINKQAEME DITGNPALVQVFGGTPEALVNYIDFVAEVWDGPMLLDSTSGEARMAAAKRATEAGYAKQC IYNSINVSIDEQEYQVLVESDLEASIVLCFDPMDPTVEGKINVLTNGGKTADKGMLELAE KAGIKYPLIDTAVTPLGNGAGAAVRASFAVKALFGYPVGSGIHNIPSAWDWLREFRKQLR EAGEKEKAKDIHHVCDIGANLVQVMASGDFVLYGPIDNAYMTFPAVAMVDAIIAEAAKEL GIEPV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | REQMVVEIAGRKIGGQPGEYPTALAGTIFYARHKIVEDERKGIFDKAAAEDLINKQAEMEDITGNPALVQVFGGTPEALVNYIDFVAEVWDGPMLLDSTSGEARMAAAKRATEAGYAKQCIYNSINVSIDEQEYQVLVESDLEASIVLCFDPMDPTVEGKINVLTNGGKTADKGMLELAEKAGIKYPLIDTAVTPLGNGAGAAVRASFAVKALFGYPVGSGIHNIPSAWDWLREFRKQLREAGEKEKAKDIHHVCDIGANLVQVMASGDFVLYGPIDNAYMTFPAVAMVDAIIAEAAKELGIEPV | |||||||||||||||||||
1 | 2dzaB | 0.13 | 0.10 | 3.62 | 1.65 | SPARKS-K | --------RTLWLRDRALDLRVRLLGVLNLTPDSA--------------LERAREMVAEGA-----DILDLGAEEKRRLLPVLEAVLSL-GVPVSVDTRKPEVAEEALKLG-------AHLLNDVTGLRDERMVALAARHG-VAAVVMHMPPDPATMMAHARYVVAEVKAFLEAQARRALSAGVPQVVLDPGFGF-GKLLEHNLALLRRLDEIVGHPVLVGLSRKRTIGELSG------------VEDPAQRVHGSVAAHLFAVMKGVRLLRVHD---VRAHREALGVWEALY------------ | |||||||||||||
2 | 5uurA | 0.15 | 0.13 | 4.29 | 2.01 | FFAS-3D | -TSPRLDCAGRIL----TLDRPRVMGIVNVTPDSFTHTTVEAAV--AHGLRLAEEGADLLDIGGEVPVEE----ELRRVIPVIERLVAQTALPLSVDTFKPEVMRAAVAA-------GAGMINDVQALRQPGALDAVADLRVP-VVLMHMPAAGPHYDDVVAEVHR----FLVERIFAAEMAGIDRLLIDPGF-GFGKSTADNVQLLAHLPCELGVPVLAGLSRKRSIGELT------------GRELPEQRVAGSVAAHLLAAQRGALLLR---VHDVAATVDALTVWQAVQA----------- | |||||||||||||
3 | 2yciX | 0.17 | 0.13 | 4.43 | 3.95 | HHpred | --------GLVPRGSH----MFIMIGEINGMFKDIREAILNKDPRPI--QEWARRQAEKGA-----HYLDVNTDPVRVMEWLVKTIQEVVDLPCCLDSTNPDAIEAGLKVHR-----GHAMINSTSADQMDIFFPMAKKYE-AAIIGLTMNEVPKDANDRSQLA--------MELVANADAHGITELYIDPLILPVNVAQEHAVEVLETIKLMAAPRTVLGLSNVSQKCP--------------------DRPLINRTYLVMAMTAGLDAAIMDVDD--DALVDAAATAHILLNKEIYCD----- | |||||||||||||
4 | 3h2aB | 0.15 | 0.12 | 4.09 | 1.31 | MUSTER | KWDYDLRCGEYTL--NLNEKT-LIMGILNVTP--------GGSYEVDAAVRHAKEMRDEGA-----HIIDIGGESIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEA--------AHIINDIWGAKAPKIAEVAAHYDVP-IILMHNRDNMNYRN-----LMADMIADLYDSIKIAKDAGVRNIILDPGIG-FAKTPEQNLEAMRNLEQLNVYPVLLGTSRKSFIGHVLD-------------LPVEERLEGTGATVCLGIEKGCEFVRVH---DVKEMSRMAKMMDAMIGK---------- | |||||||||||||
5 | 3tr9A | 0.14 | 0.11 | 3.83 | 1.52 | CNFpred | --SFHLRLRKRIVF-----SEPAVMGIINVSPNSFYHPH----LDLNSALRTAEKMVDEG-----ADILDIGG-TQIELDRLLPVIDAIKPQLISVDTSRPRVMREAVNTG-------ADMINDQRALQLDDALTTVSALK-TPVCLMHFPSETRKPGTHFYFLQSVK-KELQESIQRCKKAGISRIIIDPGFGQGGKNVSENFYLLNKLPEFVGLPVLSGWSRKSMIGDVLN-------------QPPENRLFGSIAADVLAVYHGASIIRTHDVK---ATREAIKIATYTR------------ | |||||||||||||
6 | 2bmbA | 0.13 | 0.11 | 3.96 | 1.27 | HHsearch-2 | DEDTLWKL--VPLPYRNRVSPTYIMAIFNATPDSFSDGGEHFADESQ--LNDIIALYLHES-----VIIDVGGSEEEEIRRSIPLIKAITKVILSIDTYRSNVAKEAIKV-------GVDIINDISGGLFDNMFAVIANPE-ICYILSHTRGDISTMNRKTVLIRNVGQEI-GERYIKAIDNGVWQILIDPGLG-FAKTWKQNLQIIRHIPILYNMPVLLGPSRKKFIGHITKDV------------DAKQRDFATGAVVASCIGFGSDMVRVHDV---KNCSKSIKLADAIYKGLE-------- | |||||||||||||
7 | 3bofA2 | 0.12 | 0.10 | 3.56 | 1.61 | Neff-PPAS | --SKLVTF----------DHFVVIGERINPAGRKKLWAEMQ-KGNEEIVIKEAKTQVEKGAEVLDVNFGIESQIDVRYVEKIVQTLPYVSNVPLSLDIQNVDLTERALRAY-----PGRSLFNSAKVDEEEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHDFS-------DRVIFDPGVLPLGAEPVEVLKTIEFISS-KGFNTTVGLSNLSFGLP--------------------DRSYYNTAFLVLGISKGLSSAIMNPLD--ETLMKTLNATLVILEKKEL------- | |||||||||||||
8 | 2yciX | 0.16 | 0.13 | 4.45 | 1.96 | HHsearch | --------GLVPRGSH----MFIMIGEINGMFKDIREAILNKDPRPI--QEWARRQAEKGA-----HYLDVNTDPVRVMEWLVKTIQEVVDLPCCLDSTNPDAIEAGLKVHR-----GHAMINSTSADQMDIFFPMAKKYE-AAIIGLTMNGVPKDANDRSQLA--------MELVANADAHGITELYIDPLILPVNVAQEHAVEVLETIKLMAAPRTVLGLSNVSQKCP--------------------DRPLINRTYLVMAMTAGLDAAIMDVDD--DALVDAAATAHILLNKEIYCDSLKT- | |||||||||||||
9 | 1aj0 | 0.13 | 0.10 | 3.67 | 2.07 | PROSPECTOR2 | M---KLFAQGTSLDL----SHPHVMGILNVTPDSFSDGGTHNSLIDA--VKHANLMINAGA-----TIIDVGGESLQRVIPVVEAIAQRFEVWISVDTSKPEVIRESAKV-------GAHIINDIRSLSEPGALEAAAETG-LPVCLMHMQGNPKTFAEVNRYF--------IEQIARCEQAGIAKLLLDPGFG-FGKNLSHNYSLLARLAEHFNLPLLVGMSRKSMIGQLLN-------------VGPSERLSGSLACAVIAAMQGAHIIRVHDV---KETVEAMRVVEATLS---AKENKRYE | |||||||||||||
10 | 2bmbA2 | 0.14 | 0.11 | 3.71 | 2.91 | SAM | ------------------VSPTYIMAIFNATPDSFSDGGEHFADESQ--LNDIIALYLHES-----VIIDVGGSEEEEIRRSIPLIKAIRKVILSIDTYRSNVAKEAIKV-------GVDIINDISGGLFDNMFAVIANPE-ICYILSHTRGDISTMNRLAVLIRNVGQEI-GERYIKAIDNGVWQILIDPGLG-FAKTWKQNLQIIRHIPILRNMPVLLGPSRKKFIGHITKDV------------DAKQRDFATGAVVASCIGFGSDMVRVHDV---KNCSKSIKLADAI------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |