Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | GVQLGYKQFFGKNKFFGIRYYGFFDYNHAYIKSNFFNSASNVFTYGAGSDLLLNFINGGSDKNRKVSFGIFGGIALAGTTWLNSQLVNLKTTTSIYNAKINNTNFQFLFNTGLRLQGIHHGVELGVKIPTINTNYYSFMGAKLAYRRLYSVYLNYVLAY |
1 | 2x27X | 0.14 | 0.13 | 4.33 | 1.08 | MUSTER | | GLTFTYM-----ADKWGVELVAATPFNHVDVKGLLDGKLADIKQLPPTLLLQYYPMGGTNSA-----FQPYGGLGVNYTTFFDEDLASNRKAQGFSSMKLQ-DSWGLAGELGFDYMNEHALFNMAVWYMDIGPSALGVNKTKVDVDDPWVYMIGFGYKF |
2 | 3efmA | 0.10 | 0.09 | 3.28 | 1.20 | CNFpred | | TYFVDLTHRFT--NDWKLRAAYSHTDGRYLMKHVFSNYDGNLDRDDIHFSLSAPFEA------FGLRHEVALGWMSIDNHSDIQRYAM-------PADDVRTKQTGAYLVGRFALAE-PLHLIVGDRWSDWKTKQMYFSRREYRIKNQFTPYAGLTYDI |
3 | 2lhfA | 0.13 | 0.11 | 3.71 | 1.24 | HHsearch-2 | | GIRAGQQ---F--EQG--RYYATYENISDTSS----GNKLRQ--QNLLGSYDAFLPIGD-----N-NTKLFGGATLGLVKLEQDGKG---------FKRDSDVGYAAGLQAGILQLSKNASIEGGYRYLRTNASTETPHLGSLDLHSSSQFYLGANYKF |
4 | 2f1tA | 0.11 | 0.11 | 3.82 | 1.51 | Neff-PPAS | | QLGLTFTYMA--TDNIGVELLAAT-PFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSK------FRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKD-SWGAAGQVGVDYLINDWLVNMSVWYMDIDTTANYKLGQHDSVRDPWVFMFSAGYRF |
5 | 2lhfA | 0.13 | 0.11 | 3.70 | 1.17 | HHsearch | | GIRAGQQ---F--EQG--RYYATYENISDTSS----GNKLRQ--QNLLGSYDAFLPIGD-----N-NTKLFGGATLGLVKLEQDGKG---------FKRDSDVGYAAGLQAGILQLSKNASIEGGYRYLRTNASTETPHLGSLDLHSSSQFYLGANYK- |
6 | 2gskA | 0.12 | 0.11 | 3.81 | 1.03 | MUSTER | | TLYGALEHNFTDAWSGFVRGYGYDNRNYDAYYSPGSPLLDTRKLYSQSWDAGLRYNGEL------IKSQLITSYSHSKDYNYDPHY------GRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQV |
7 | 1kmoA | 0.12 | 0.12 | 4.19 | 1.13 | CNFpred | | LASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQRITLSPRNYWVRGIEPRYSQIFMIG------PSAHEVGVGYRYLNESTHEMRYYTQLPSGSSPYDRDTRSGTEAHAWYLDDKIDINWTITPGMRFEHIESYQNNATHEEVSYNAPPALNVLYHLTD |
8 | 2f1tA | 0.10 | 0.09 | 3.30 | 1.08 | HHsearch-2 | | QLGLTFTYMAT--DNIGVELLA--ATPRHKIGTRATGDIATVHHLPPTLMAQWYFGDA------SSKFRPYVGAGINYTTFFDNGFNDHGK-EAGLSDLSLKDSWGAAGQVGVDYINRDWLVNMSVWYMDIDTTANYKLHDSVR-LDPWVFMFSAGYRF |
9 | 2x27X | 0.13 | 0.12 | 4.18 | 1.49 | Neff-PPAS | | QLGLTFTYMF--ADKWGVELVAATFNHQVDVKGLLDGKLADIKQLPPTLLLQYYPMGGTN-----SAFQPYGGLGVNYTTFFDEDLASNRKAQGFSSMKLQ-DSWGLAGELGFDYMLEHALFNMAVWYMDIDTKASINGPTKVDVDDPWVYMIGFGYKF |
10 | 2f1tA | 0.11 | 0.10 | 3.64 | 1.08 | CNFpred | | GLTFTYMAT----DNIGVELLAATPFRHKIGTRA-TGDIATVHHLPPTLMAQWYFG------DASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKD-SWGAAGQVGVDYLI-DWLVNMSVWYMDIDTTANYKLQQHDSVRLPWVFMFSAGYRF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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