>PF01732 (386 residues) NEHYKRAANQTYAFSVNNPDPAKKDDLRTSIPSRGTFWLLDFAQPEQGKYPTKWYFGTNL HVADLIRGDSRSFNLTFLPNEIGTRTKLKTSGHDGRFKFATFLLNSTGKDDSRIGNSSEL TAEQIKYGKKSPFVDVIYRGSNFLKSNPADYLVQEQKNKFQNLQEFADFAVVEIDFSQAT KKDLDDNNVSSPEELAKFVTNGYALETNKDNWVKFKKHSYLKNYNEIDFPLTSKENQKKP LNKVDQLFALGYPLSVGDYFLENYIDEDQLSDPQWNVSLWVNSDSSFYNNLDKPENANEN TKKEARINRGNFLSYQIGYRSFTNLPGVTDNFLASIKNGNTFYKTHDNKEYIAAGLNYLP RHYVPYGGASGTSIRNEKNELVAVFH |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | NEHYKRAANQTYAFSVNNPDPAKKDDLRTSIPSRGTFWLLDFAQPEQGKYPTKWYFGTNLHVADLIRGDSRSFNLTFLPNEIGTRTKLKTSGHDGRFKFATFLLNSTGKDDSRIGNSSELTAEQIKYGKKSPFVDVIYRGSNFLKSNPADYLVQEQKNKFQNLQEFADFAVVEIDFSQATKKDLDDNNVSSPEELAKFVTNGYALETNKDNWVKFKKHSYLKNYNEIDFPLTSKENQKKPLNKVDQLFALGYPLSVGDYFLENYIDEDQLSDPQWNVSLWVNSDSSFYNNLDKPENANENTKKEARINRGNFLSYQIGYRSFTNLPGVTDNFLASIKNGNTFYKTHDNKEYIAAGLNYLPRHYVPYGGASGTSIRNEKNELVAVFH | |||||||||||||||||||
1 | 4ic6A | 0.14 | 0.06 | 2.20 | 1.08 | CNFpred | VQLFEKNTYSVVNIFDVTLRP-----------GNGSGVVWDG----------QGYIVTNYHVIGNALSR----------------------NPSPGDVVGRVNILASDGVQK--------------------NFEGKLVGADR----------------------AKDLAVLKVDAPE--------------------------------TLLKPIKVGQSNSLK-----------------VGQQCLAIGNPFGFD--------------------------------------------------------------------HTLTVGVISGL---NRDIFSQ-----TGVTIGGGIQTDAINPGNAGGPLLDSKGNLIGINT | |||||||||||||
2 | 5jwgA3 | 0.13 | 0.09 | 3.08 | 1.23 | HHsearch-2 | NGQVARMKSLGMQLEAADIYNPNGLKDAVMFDGGCTGVLVS---N-QG------LLLTNHHCGYDQIQKHSSVQ------HNYLKDGFWSYSLAEEL-----------------------VNPGL-EVEVFRDVRLVAAPPSSIGSDTDN---------WAWPRHTGDFSIFRLYADKNG-N-----------------PAEYSKDNVPYRPKRWV-------------KVNAQ---G--VKEGDFALIMGYPGTTYKFFGNLAPDA--------NLTLRFTYG-----EIK-----------GYQPRDV------VTYGAKSTLEGVMEKEDPNWEYVPKLKALYNYGRYADGSMPVFCATTHTTGGNAGSPVMNARGELIGLNF | |||||||||||||
3 | 5jwgA3 | 0.12 | 0.09 | 3.11 | 1.34 | Neff-PPAS | NGQVARMKSLGMQL---EAADIYNPNGSSLKDGGCTGVLVSN----------QGLLLTNHHCGYDQIQKHSSVQHNYLKDGFWSYSLAEELVNPG------------------------------LEVEVFRDVRLVAAPP----SSIGKFGSDTDNWAWPRH--TGDFSIFRLYADKNGNPAEYS-----------------------KDNVPYRPKRWVKVNAQ-------------GVKEGDFALIMGYPGTT------YKFFGQPNLAPDANLTLRFTYGEIKGYQPRDVVTYGAKSTLEGVMEKEDP----------NNWEYVVDPKLKALYEAKNYGRYANSDGSMPVNFCATT---HTTGGNAGSPVMNARGELIGLNF | |||||||||||||
4 | 3woiA3 | 0.11 | 0.08 | 2.80 | 1.13 | PROSPECTOR2 | GEIAGPLKKAGLKLSPQQISDLTGDPGAVVALGGCTASFVS----PNG------LVVTNHHCAYGAIQLNSTAENNLIKNGFNAPTTADEVSAGPNARVFEI-----------------------------KDVRLAYA-------PPGSVGKFGGDIDNWWPRHTGDFAFYRAYVGKDGKPAAFSKDN-------------------------------------VPYQPKHWLKFADQPLGAGDFVVAGYPGSTNRYFVYPDANLSLGYAPKDGEYTPFTTLEGVVAKETGQDPFDSPKALLDAVAAKRYGGLEDKRIGSV--------------------------------PVNYLSDLDITGGNAGSPVLDAHGKLVGLAF | |||||||||||||
5 | 5n0bA | 0.08 | 0.07 | 2.66 | 0.83 | SPARKS-K | WEDIDVILKKSTILNLDINN-------DIISDISGFSSVIAIHLVNNES--SEVIVHKAMDIEYNDMFNNPKVSASHLEQYG--TNEYSIISSMKGLKGNNLIWTLKDSAGEVRQITFRDLPDKFNAYL-ANKWVFITITNDYINGVITGLGAIREDNNCNNNNQYVSIDKFRIFCKALN------------PKEIEKLYTSYLS----ITFLRDFWGNPL-RYDT-------------------EYYLIPVLKNITDYMYLTNAPSYTNGKLNIYYRRLYNGLKFIIKRYTPNNEIDSFVKSGDFINNEHIVGYPKDGNAFNNL--DRILRVGYNAPGIPLYKK-----------MEAVKLRDLKTYSVQLKLYDDKNASLGLVG | |||||||||||||
6 | 3woiA3 | 0.11 | 0.08 | 2.73 | 0.77 | FFAS-3D | -QQLPEIAGPLKKAGLKLSPQQISDLTGDPGAGGCTASFVS----PNG------LVVTNHHCAYGAIQLNSTAENNLIKNGFNAPTTADEVSAGPNA-----------------------------RVFEIKDVRLAYAP-------PGSVGKFGGDIDNWWPRHTGDFAFYRAYVG------------------------------KDGKPAAFSKDN-------VPYQPKHWLKFADQPLGAGDFVVAGYPGSTNRYFVYPDANLSGYAPKDGEYTPFTT-LEGVVAKETGQDPFDSPKALLDAVAAKRYGGLEDKRIG--------------------------------SVPVNYLSDLDITGGNAGSPVLDAHGKLVGLAF | |||||||||||||
7 | 5jwgA3 | 0.20 | 0.12 | 3.99 | 0.55 | HHpred | ------ARMKSLGMQLENPNGSSLKDAVVMFDGGCTGVLV----SNQG------LLLTNHHCGYDQIQKHSSVWSYSLAEELVN-PGLEV----E----------------------------------VFRDVRLVAAPPGKFGSDTDNWAWP---------RHTGDFSIFRLYADK-N--------GNP------------------------------AEYSKDNVPYRPKRVNAQGVKEGDFALIMGYPGTTYKFF-G--Q------------------P-----NLAPDA-N-----LTLRFTYGEIKGYQPTYGAKSTLEGVMEKEDP----NNWEYVVYEAKRYGSMPVNFCATT-HTTGGNAGSPVMNARGELIGLNF | |||||||||||||
8 | 2xidB | 0.11 | 0.10 | 3.73 | 0.82 | MUSTER | GDYSKLLEGATLQLTGDNVNSFQADIGERIELSDGTYTLTELNSPAGIAEPITFKVE------KVYTIGKQIENPNKEIVEPYSVEAYNDFEEFSVLTTQNYYAKNKNGSSADLKSPPDSEDGGKTMTPDFTTGEVKYTHIAGRD--LFKYTVK---PRDTDPDTFLK-HIKKVIEKGYREKGQAIEYSGLTETQLRAATQLFTDSAELDHGFGDMNDSTLAVAKIL---VEYAQDSNPPQLTDLDFFIPN--NNKYQSLIGTQWHPEDLVDIIRMEDKKEVIPVTLRKTVTGLAGDRTKDFHELKNNKQELLSQTVKTDKTN----------LEFKDGKATINLKHGESLTL-GYSYLVKETDSEGYVNSQEVANTSDETLAFEN | |||||||||||||
9 | 5xdyA | 0.14 | 0.06 | 2.11 | 1.01 | CNFpred | TKVAAAVADSVVTIESVSD----------QEGMQGSGVIVDG----------RGYIVTNNHVISEAANN-------------QFKTTVVFN------DGKEVP------------------------------ANLVGRDP------------------------KTDLAVLKVDNVDN-------------------------------TVARLGDSSKVR--------------------VGDEVLAVGAPLGLRS--------------------------------------------------------------------TVTQGIVSAL---HRPVPLS-DTDTVIDAIQTD---ASINHGNAGGPLIDMDAQVIGINT | |||||||||||||
10 | 3woiA3 | 0.16 | 0.11 | 3.72 | 1.04 | HHsearch-2 | PEIAGPLKKAGLKLSPQQISDLTGDPGAVVALGGCTASFVS---PN-G------LVVTNHHCAYGAIQLNSTAENN------LIKNGFNAPTTA-----DEVSAG---------------PN---ARVFEIKDVRLAYAPPGSVGKFGGD------IDNW-WPRHTGDFAFYRAYVGKDG-K-----------P------AAFSKDNVPYQPKHWLK-------------FADQ---P--LGAGDFV-VAGYPGSTNRYFV--YPDA--------NLSLRITFGN-V--GYAPKD-GEYTPFTT----LEGVVAKETGQDPF-DSPKLLDA-VAAKRYGG-----LEDK--RIGSVPVYLSDLDITGGNAGSPVLDAHGKLVGLAF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |