>PF01673 (535 residues) LFSELLFASHLINVPRAIENNVTYEASSAVGVDNEMTSSTTEFIEEIGDVLALDRACLVC RTLDLYKRKFGLTPEWVADYAMLCMKSLASPPCAVVTFSAAFEFVYLMDRYYLCRYNVTL VGSFARRTLSLLDIQRHFFLHVCFRTDGGLPGIRPPPGKEMANKVRYSNYSFFVQAVVRA ALLSISTSRLDETETRKSFYFNQDGLTGGPQPLAAALANWKDCARMVDCSSSEHRTSGMI TCAERALKEDIEFEDILIDKLKKSSYVEAAWGYADLALLLLSGVATWNVDERTNCAIETR VGCVKSYWQANRIENSRDVPKQFSKFTSEDACPEVAFGPILLTTLKNAKCRGRTNTECML CCLLTIGHYWIALRQFKRDILAYSANNTSLFDCIEPVINAWSLDNPIKLKFPFNDEGRFI TIVKAAGSEAVYKHLFCDLLCALSELQTNPKILFAHPTTADKEVLELYKAQLAAQNRFEG RVCAGLWTLAYAFKAYQIFPRKPTANAAFIRDGGLMLRRHAISLVSLEHTLSKYV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LFSELLFASHLINVPRAIENNVTYEASSAVGVDNEMTSSTTEFIEEIGDVLALDRACLVCRTLDLYKRKFGLTPEWVADYAMLCMKSLASPPCAVVTFSAAFEFVYLMDRYYLCRYNVTLVGSFARRTLSLLDIQRHFFLHVCFRTDGGLPGIRPPPGKEMANKVRYSNYSFFVQAVVRAALLSISTSRLDETETRKSFYFNQDGLTGGPQPLAAALANWKDCARMVDCSSSEHRTSGMITCAERALKEDIEFEDILIDKLKKSSYVEAAWGYADLALLLLSGVATWNVDERTNCAIETRVGCVKSYWQANRIENSRDVPKQFSKFTSEDACPEVAFGPILLTTLKNAKCRGRTNTECMLCCLLTIGHYWIALRQFKRDILAYSANNTSLFDCIEPVINAWSLDNPIKLKFPFNDEGRFITIVKAAGSEAVYKHLFCDLLCALSELQTNPKILFAHPTTADKEVLELYKAQLAAQNRFEGRVCAGLWTLAYAFKAYQIFPRKPTANAAFIRDGGLMLRRHAISLVSLEHTLSKYV | |||||||||||||||||||
1 | 6h7wQ | 0.09 | 0.08 | 3.09 | 1.16 | FFAS-3D | ---------------------------------EDALIAVRQQTAMMRKFL--DTPGKLMDALKCCST-------LVSELR----TSSLSPKQYYELYMAVFDALRYLSAHLRENPVNHLADLYELVQYIIPRLYLMITVGTAYMSIDGAP---------VKELMKDMMDMSVRGLFLRYYLSGQARDYLPTGD-------SDGPEGNLQDSINFILTNFVEMNKLWVRLQHQGHSRERDLRTQERRERDILAQEYLLEVITQVFPDEYHLHTLDQFLGAVSRLNPHVNVKAIVIGMMNRYDIFFDQVQHLVQAQHLPALAKVKEHANSADLHSQPAQQSLLSLLQSPLRRYVSIFTALLFQAQTYPTRRAIAGEIVRTLLKNQTSTPAHLENVLEILKVLIKEGSQME-----EQGWLARLVHLIHSDDNDTQF--RLLQMTRIRTTTPPLITDNWSSQSSSLFKFLHSAISTLYTRVNGPGVADLCLRLFCSCGQVADMTEFVAYEFFAQAFTVYEESISDSKAQFQAVCVIA | |||||||||||||
2 | 3s4wA | 0.11 | 0.09 | 3.21 | 1.29 | CNFpred | PLDHLLSCIQHCLAWYKSRVVP------------ELYSELDDMLESITVRMIKS-TNVGIKNNICAC-------LIMGVCEVLMEYNFS-SKSKFEEILSLFTCYKKFSDILSEKA-----------DSLLSLKFVSDLLTALFRD-------SIQSHEESLSVLRSSFMHYAVNVTLQKIQQLIRTGHVSGPDG---------------QNPDKIFQNLCDITRVLLWR----------SISLLCLEGLQKTFSVVLQFY--------QPKVQQFLQALDVMGTEEAGVTVTQRASFQIRQFQRSLLNLLSSEEDDFNSKEA-----------LLLIAVLSTLSRLLEPTSPQFVQMLSWTSKICK-DASFCKSLMNLFFSLHVSPVTLLRDLSQDIHGQLGD----QDVEIEKTDHFAVVNLRTAA-----PTVCLLVLSQAEKV--------------LEEVDWLIAKIKGS-LIEKAIVMQLGTLVTFFHELVQTALPGSCVDTLLKGLSKIY--------STLTAFVKYY | |||||||||||||
3 | 1b3uA | 0.09 | 0.09 | 3.28 | 1.47 | Neff-PPAS | SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVALAEQLGTFTTLVGGPEYVHCLLPPLESLATVETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP---RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL---ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV-----------------IMGLSPILGKDNTIEHLLPLFLAQLKDCPEVRLNIISNLDCVNEVIGIRQLSKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDTSNLKKLVEKFGKEWAHATIIPKVLAM-SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGPVANVRFNVAKSLQKIG | |||||||||||||
4 | 5mz611 | 0.07 | 0.06 | 2.42 | 1.27 | PROSPECTOR2 | HIEKLTVIGFAEQTAELQQEISELFIAEFGVNGPIDMNSLSKLARITSYYASSEYFQGLAKYQRTACKMFITWQTLRKEAAKLCFFYFYNGELCRAVVCLLDYIDELIEKKLKTWKMDKSSKDMSEYRVEMLESYVSWLCSTLSNVPVGSALRECEFPDRVSHIQEALKSDSLVRNRIPGLASSQFDNSVNASIWPFLDGHQEDSNYYVHIGSTIAWHFEMRRECALVNVTTAQTR------------DSMSAMILNLRVALKSASFFRVLQTTNTLAYYSSIIEEAGSEKNAKLMRVSCVNLL-----------------------------------------------SSNPIVCNVCTIYPLHSSFAAEYMMSYAIHSDFSQLNDEFARIRERGMSSQVLMHRDSSVRPRPNIIQNEIFGMCVIRWLTK-------------------KLDSKESADEDTMEIFNNALKIVRYLQQRTTDMILAVTQLGRQLEFPMECNYRFEKVRLAMRNEMNHYGHILYREAYVGRTSM | |||||||||||||
5 | 5mz611 | 0.09 | 0.07 | 2.87 | 0.93 | SPARKS-K | -----------------------------------HIEKLDELRKNVSCTVIGFAEQELQQEISELFIAEPIDMNSLSKLARITSYYASSEYFLAKYQRTACKMFITWQTLRKMECRSKDREIFA---SIPAKLCFFYFYNGEL----------------CRAVVCLLDYIDLSEAALRWLMFLGET------ELIEKKLKTWKMDKSS----KDMFSATEFAMNYLKKSEY----------RVEMLEKLMKLRDKVKSDPTRSFSRYELASYVSWLCSTLSNVPVGSALRHIQEAALKSDSLVRNRIPGLFDNSVNASIWPFLDGHQEDSNYYVHIGSTIAWHFEMRRKSASFFRVLQTTNTLAYYSSIINAKLMRVSCVNLLCTIYPSSFAAEYMMSYAIHSD-----FSQLSIKHFNDEFARIRMSSQVLMHRPNIIQNEIFGMCVIRWLTKKLKESADEDTMEIFNNALKIVRYLQQRTTDMILAVTQLGRQLEFPMECNRFEKVRLAMRNEMNHYGHILYRLFAYVGRTS | |||||||||||||
6 | 2x1gF | 0.07 | 0.06 | 2.44 | 1.11 | FFAS-3D | --AHLTRILRKSEQPDEKSLAKW---------SSDDLECFRCYRQDISDTFMVLNDYILAAMLDEAIADLQHPTHWTKLEACIYSFQSVAEHRQIPRLMLLGTALETMGSY----------CNWLMYIPPAINLLVRGL----------NSSMSAQATLGLKELCRDCQLQL--KPYADPLLNACHA---------------SLNTGRMKNSDSVRLM--FSIGKLMSLLRPEEIPSPCFEELQAICQATPAARIRTIFSSLNTPVLLVMQRTMPIFKRIAEMWV--EEIDVLEAACSAMKHAITNLRSQPMLQD--------------------------LCLFIVASFQCCAPTLEISKTAIVKPLMQQLLREFIQHSFKLFSNISDTMETFFGCLTQIIKKIPQVEDKTLAYDRLVFYAQRGMTLPQFLTHFVMTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMRKYAAEMAVWMKSLMRYTALIIKEKVNKRLLQQHLSEMAMKTR----------------- | |||||||||||||
7 | 1vt4I | 0.15 | 0.11 | 3.71 | 0.44 | HHpred | -------GEHQYQYKDILSVFEDAVDNFDCKDMPKSILSKEEIDHIIMSKD----AVSTLRLFWTLLSKQEMVQKFVEEVLRINYKFLMSP--------------IKTEQRQPS--------MMT--RMYIEQRDRLYNDNQVFAKYN--------------------VSRLQPYLKLRQALLELRPAKNVLI---DG------VLGS-GK-TWVAL---DVCLSKVQCFKIFWLN--LKNCNS--------PETVLEM----------------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-----S-----KP-----YEN-----CLLVLLKAWNAFNL--SCKILL-TTRFKQDFLSAAT---------TTHISLDHHVKLLLKYLDCRPQLPRVLTTNPR-RLSIIAESGLAWDNWKHVNCDKLTTIIESSLN--VL-------EPAE---YRKMFDRLSVFPPSIKSDVMVVVNKLHKYSLVEKESTISIPSILEL-KVKLENEYALHRSHYNIPK-- | |||||||||||||
8 | 5ifeC | 0.10 | 0.10 | 3.55 | 0.87 | MUSTER | TARAFAVVASALGIPSKAVCKSKKSWQA-ILMGCAILPHLRSLVEIIEHGLVDEQQ-ISALAIAALAEAATPYIESFDSVLKPLWKGI-RGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIR-EFQSPDMKKI-VVKQCCGTDGVEAQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMEMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVNGFGTVVNALGKRVKPYLPQICGTVLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKD-PRLTPILKNRHEKVQENCIDLVGRIADGAEYAREWMRICFELLELLKAKKAIRRATVNTFGYIAKAIGPHDVLATLQNVAIAIVAETCSPFTVLPALM-ELNVQNGVLKS--SFLFEYIGEMGKDYIYAVTPLLEDA--LMDRDLVHRQTASAVVQHMSLGVYGFDSLNHLLNYVWPNVFETSLEGLRVAIGPCRML | |||||||||||||
9 | 4p6zB | 0.10 | 0.08 | 2.87 | 1.28 | CNFpred | LFPDVVNCMQT---------------------------DNLELKKLVYLYLMNYA--MAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQLVEDQGFLDTLKDLISDS-------------------NPMVVANAVAALSEIAESHPSS----------------NLLDLNPQSINKLLTALGQIFILDC------------LANYMPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYGTLLKKLAPPLVTLLSAEPELQY---------------VALRNINLIVQKRPKVFFVKDPIYVKLEKLDIMIRLAIAQVLAELKEYATEDVDFVRKAVRAIGRCAIKVE-----------QSAERCVSTLLDLIKVNYVVQEAIVVIKDIFRKYKYESVIAALCDSLDEPEARAAMIWIVGEYAE-DKSTQVQLQLLTAIVKLFLKK--PTETQELVQQVLSLATQD-SDNPDLRDRGYIYW | |||||||||||||
10 | 2pffB | 0.14 | 0.12 | 4.07 | 0.86 | HHsearch-2 | LSHVLLIASQLQEQFNKILPEPT--EGFAADDEPTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT---TLVKTKELIRIMARPFDKKSNSA---LFR--AVGEGNAQLVAIFGGQGNTDD--------YFEELRDLYQTYHVLKFSAETLSELIRTTLDAE-------------KVF------TQGLNILEWLENPS-----NTPDKDYIPISCPLILLFTPGELRSYLKG------ATGHSQGL--VTAVAIAETDSWESFFSVRKAITVLFIGVRCYEA----YPNTSLPPSIL---EDSLENNEGVPSPMLSISNLEQVQNEISLVNGAKNLVVGPPQ-----SLYGLNLTLRKAKAPSLDQSRPFSEKLKFSNRFPVHLLPASDLINKDLVKNVSFNAKDIQIVYDTFDG-----SDLRVLSGSIS----ER--IVDCIIRLP---------VKWETTTQFKATHILDFGPGGASG----LGVLTHRNKGVRVIVAGTLDINP | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |