Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | VGGNFYISGKYVPSVSHFGVFSAKQERNTTTGVFGLKQDWDGSTISKNSPENTFNVPNYSFKYENNPFLGFAGAVGYLMNGPRIELEMSYETFDVKNQGNNYKNDAHKYYALTHNSGGKLSNAGDKFVFLKNEGLLDISLMLNACYDVISEGIPFSPYICAGVGTDLISMFEAINPKISYQGKLGLSYSISPEASVFVGGHFHKVIGNEFRDIPAMIPSTSTLTGNHFTIVTLSVCHFGVELGGRFNF |
1 | 2x27X | 0.15 | 0.11 | 3.80 | 1.28 | SPARKS-K | | KAGDFIIRGGFATVDPD--------------------DSSSDIKLDGAKQRG--------TKATVDSDTQLGLTFTYMFDKWGVELVAAT---------------PFNHQVDVKGLLD-----------GKLADIKQLPPTLLLQYYPMGTNSAFQPYGGLGVNYTTFFDEDKLQDSWGLAGELGFDYMLNEHALFNMAVWYMDID----TKASINGPSALGVNK---TKVDVDVDPWVYMIGFGYKF |
2 | 2f1tA | 0.13 | 0.08 | 2.96 | 1.72 | FFAS-3D | | -AGEFFMRAGSA---------TVRPTEGGGFSV--------------------------------TNNTQLGLTFTYMATDIGVELLAAT-----------------PFRHKIGTRAT-----------GDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDI------DTTANYKLGGAQQH-----DSVRLDPWVFMFSAGYRF |
3 | 2x27X | 0.16 | 0.12 | 3.91 | 1.54 | HHpred | | KAGDFIIRGGFATVDPDDSSSDIKLDG--------------------------AKQRGTKATV--DSDTQLGLTFTYMFDKWGVELVAATFNHQVDVK-GL---L--------D---------------GKLADIKQLPPTLLLQYYPMGGTSAFQPYGGLGVNYTTFFDEDKLQDSWGLAGELGFDYMLNEHALFNMAVWYMDID-TKAS-INGP-----SALGVNKTKVDVDVDPWVYMIGFGYKF |
4 | 2x27X | 0.14 | 0.10 | 3.58 | 1.46 | MUSTER | | KAGDFIIRGGFATVDPD--------------------DSSSDIKLDGAKQR--------GTKATVDSDTQLGLTFTYMFDKWGVELVAAT----------------PFNHQV-------DVKGLLDGKLAD---IKQLPPTLLLQYYPMGTNSAFQPYGGLGVNYTTFFDEDKLQDSWGLAGELGFDYMLNEHALFNMAVWYMDI-------DTKASINGPSALGVNKTKVDVDVDPWVYMIGFGYKF |
5 | 2f1tA | 0.12 | 0.07 | 2.43 | 1.63 | CNFpred | | ----------------------------------------------------------------VTNNTQLGLTFTYMATNIGVELLAATP---------------FRHKIGTR-------------ATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDID----TTANYKL---------AQQHDSVRLDPWVFMFSAGYRF |
6 | 1p4tA | 0.17 | 0.10 | 3.32 | 1.91 | HHsearch-2 | | GASGFYVQADAAHAKASSS------------------------------------L-----G--SAKGFSPRISAGYRID-LRFAVDYTRYKNYKAP----------------------------------STDFKLYSIGASAIYDFDTQS-PVKPYLGARLSLNRASVDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVN--T------------------V-KNVRSGELSAGVRVKF |
7 | 2x27X | 0.16 | 0.12 | 4.02 | 2.07 | Neff-PPAS | | -AGDFIIRGGFATVDPDDSSSDIKLD----------------------------GAKQRGTKATVDSDTQLGLTFTYMFDKWGVELVAAT-----------------PFNHQVDVKGLLD---------GKLADIKQLPPTLLLQYYPMGGTSAFQPYGGLGVNYTTFFDEDLAQDSWGLAGELGFDYMLNEHALFNMAVWYMDIDTKASINGP-------SALGVNKTKVDVDVDPWVYMIGFGYKF |
8 | 1p4tA | 0.16 | 0.09 | 3.09 | 2.46 | HHsearch | | GASGFYVQADAAHAKASSS------------------------------------L-----G--SAKGFSPRISAGYRID-LRFAVDYTRYKNYKAP----------------------------------STDFKLYSIGASAIYDFDTQS-PVKPYLGARLSLNRASVDLFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVN--T--------------------VKVRSGELSAGVRVK- |
9 | 2lhfA | 0.09 | 0.06 | 2.44 | 1.47 | PROSPECTOR2 | | --ADNFVGLTWGETSNN----------------------------IQKSKSLNRNLNSPNLDKVIDNTGTWGIRAGQQFEQGRYYATYENISDTSSGNKLR-----------------------------------QQNLLGSYDAFLPIGDNNTKLFGGATLGLVKLEQKRDSDVGYAAGLQAGILQELSKNASIEGGYRYLRTNASTEMTPHGGNKLGSLDLHSS----------SQFYLGANYKF |
10 | 2mlhA | 0.21 | 0.13 | 4.21 | 1.40 | SAM | | --RGPYVQADLAYAYEHITHDYPEPNR--------------------------------------TRSVHPRVSVGYDF-GWRIAADYAYRKWNNNKYSVN---------------------------NQENGTFHAVSLGLSAIYDFQIND-KFKPYIGARVAYGHVRHSSNSIRRVGLGVIAGVGFDITPKLTLDAGYRYHNWGRL-------------------------RFKTHEASLGVRYRF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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