>PF01490 (403 residues) TSYMETLTHLFKGNMGPGCFAMADAVMNGGLLLGPILILFFGVVCVHAQHILLNCSAKMK HKYQLLCKPDYAETVGLCFLSSNNEKYRKYASTMKTVCNTFICITQLGICCIYFLFIGTN LKQVLDFYNFQVSLTMMMTIVLIPIWLSALITNLKFLAPCSGIANVCMVLGLVISYFYSA QDLPPINERYFIPPNMKQLPLFFGTAIFAFEGIALVLPLQNAMRKPRNFSKPLGVLNVGM FYVIAIFISFGAVGYWKYGDDTQASLTLNLPTDDILAQCVKIAIALGVMLGYAIQFYIAI NVMYPSIMRKFRFTDRHPYIGELLFRSFMVIITFAIAQLVPNLSLLLSLIGALCSTSLAL VLPPIIEFIILSNEEEGVTWTLLVKNYSILIISLIGVITGGYE |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | TSYMETLTHLFKGNMGPGCFAMADAVMNGGLLLGPILILFFGVVCVHAQHILLNCSAKMKHKYQLLCKPDYAETVGLCFLSSNNEKYRKYASTMKTVCNTFICITQLGICCIYFLFIGTNLKQVLDFYNFQVSLTMMMTIVLIPIWLSALITNLKFLAPCSGIANVCMVLGLVISYFYSAQDLPPINERYFIPPNMKQLPLFFGTAIFAFEGIALVLPLQNAMRKPRNFSKPLGVLNVGMFYVIAIFISFGAVGYWKYGDDTQASLTLNLPTDDILAQCVKIAIALGVMLGYAIQFYIAINVMYPSIMRKFRFTDRHPYIGELLFRSFMVIITFAIAQLVPNLSLLLSLIGALCSTSLALVLPPIIEFIILSNEEEGVTWTLLVKNYSILIISLIGVITGGYE | |||||||||||||||||||
1 | 6c08C | 0.16 | 0.14 | 4.54 | 2.20 | SPARKS-K | ---IVTIFAIWNTMMGTSILSIPWGIKQAGFTLGIIIIVLMGLLTLYCCYRV-----------LVC---------KYYFGGFGKWS-----------SLVFSLVSLIGAMVVYWVLMSNFLFNTGKFITERVICHWWSKTNTIPFYLILL--SASFFARFTFLGTISVIYLIFLVTYKAIQLGFHLEFHFFVPEFRTLFPQLSGVLTLAFFIHNCIITLMKNNKHQE----NVRDLSLAYLLVGLTYLYVGVLIFAAFPECIEPNFLDNFPSSDILVFVARTFLLFQMTTVYPLLGYLVR-----VQLMGQLHVFV--------LNVFVVGAGVLMARFYPNIGSIIRYSGALCGLALVFVLPSLIHMVS---LKRW---TSTLFHGFLILLGVANLLGQFFM | |||||||||||||
2 | 6c08C | 0.14 | 0.12 | 4.23 | 3.58 | FFAS-3D | ----VTIFAIWNTMMGTSILSIPWGIKQAGFTLGIIIIVLMGLLTLYCCYRVLVCKYY------------------FGGFGKWSSLVFSLVSLIGAMVVYWVLMSNFLFNTGKFIFNTERVICPYPDVGLEFDHWWSKTNTIPFYLILLSASFFARFTFLGTISVIYLIFLVTYKAIQLGFHLEF-HSMFFVPEFRTLFPQLSGVLTLAFFIHNCIITLMKNNKHQENV----RDLSLAYLLVGLTYLYVGVLIFAAFPECIEPNFLDNFPSSDILVFVARTFLLFQMTTVYPLLGYLVRVQLMG-------------QLHVFVLNVFVVGAGVLMARFYPNIGSIIRYSGALCGLALVFVLPSLIHMVSLKRWT------STLFHGFLILLGVANLLGQFF- | |||||||||||||
3 | 6c08C | 0.16 | 0.14 | 4.60 | 5.18 | HHpred | ---IVTIFAIWNTMMGTSILSIPWGIKQAGFTLGIIIIVLMGLLTLYCCYRVLVCK-------------------------------YYFGGFGKWSSLVFSLVSLIGAMVVYWVLMSNFLFNTGKFIFNTEFDHWWSKTNTIPFYLILL--SASFFARFTFLGTISVIYLIFLVTYKAIQLGFHLFFVPEF---RTLFPQLSGVLTLAFFIHNCIITLMKNNKHQE-NVR---DLSLAYLLVGLTYLYVGVLIFAAFPSCIEPNFLDNFPSSDILVFVARTFLLFQMTTVYPLLGYLVRVQLMGQ-------------LHVFVLNVFVVGAGVLMARFYPNIGSIIRYSGALCGLALVFVLPSLIHMVSL-K-----RWTSTLFHGFLILLGVANLLGQFFM | |||||||||||||
4 | 6c08C | 0.16 | 0.14 | 4.61 | 2.05 | MUSTER | ---IVTIFAIWNTMMGTSILSIPWGIKQAGFTLGIIIIVLMGLLTLYCCYRVLVCKYY-------------------------------FGGFGKWSSLVFSLVSLIGAMVVYWVLMSNFLFNTGKFIRVICPDHWWSKTNTIPFYLILL--SASFFARFTFLGTISVIYLIFLVTYKAIQLGLEFHSMFFVPEFRTLFPQLSGVLTLAFFIHNCIITLMKNNKHQE----NVRDLSLAYLLVGLTYLYVGVLIFAAFPSPIEPNFLDNFPSSDILVFVARTFLLFQMTTVYPLLGYLVRVQLMGQ-------------LHVFVLNVFVVGAGVLMARFYPNIGSIIRYSGALCGLALVFVLPSLIHMVSLKRWT------STLFHGFLILLGVANLLGQFFM | |||||||||||||
5 | 3gi8C | 0.08 | 0.07 | 2.95 | 2.03 | CNFpred | LSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSN------AGPIAFIHKAIGD----------NIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPIN--FNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIFAGLITIHPSYVIPDLAPAVSGMIFASAIFFLSYMGFGVITNASEHIENPK--KNVPRAIFISILIVMFVYVGVAISAIGNLPIDEL-NALAVAALGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERVWFKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVG----GRKEIVIFSFIVVLGVFLLLLYYQWI | |||||||||||||
6 | 6c08C | 0.17 | 0.14 | 4.74 | 3.51 | HHsearch-2 | ---IVTIFAIWNTMMGTSILSIPWGIKQAGFTLGIIIIVLMGLLTLYCCYRVL--------------------VCKYYFG-----------GFGKWSSLVFSLVSLIGAMVVYWVLMSNFLFNTGKFIFNTEFDHWWSKTNTIPFYLILL--SASFFARFTFLGTISVIYLIFLVTYKAIQLGFHLESMFFVPEFRTLFPQLSGVLTLAFFIHNCIITLMKNNKHQE-NVR---DLSLAYLLVGLTYLYVGVLIFAAFPSCIEPNFLDNFPSSDILVFVARTFLLFQMTTVYPLLGYLVRVQLMGQ-------------LHVFVLNVFVVGAGVLMARFYPNIGSIIRYSGALCGLALVFVLPSLIHMVSL-KR-----WTSTLFHGFLILLGVANLLGQFFM | |||||||||||||
7 | 6c08C | 0.17 | 0.14 | 4.67 | 2.78 | Neff-PPAS | ---IVTIFAIWNTMMGTSILSIPWGIKQAGFTLGIIIIVLMGLLTLYCCYRVLV-------------------------------CKYYFGGFGKWSSLVFSLVSLIGAMVVYWVLMSNFLFNTGKFITERVIDHWWSKTNTIPFYLILL--SASFFARFTFLGTISVIYLIFLVTYKAIQLGLEFHSMFFVPEFRTLFPQLSGVLTLAFFIHNCIITLMKNNKHQE----NVRDLSLAYLLVGLTYLYVGVLIFAAFPSPIEPNFLDNFPSSDILVFVARTFLLFQMTTVYPLLGYLVRVQLMGQLH-------------VFVLNVFVVGAGVLMARFYPNIGSIIRYSGALCGLALVFVLPSLIHMVSLKRW------TSTLFHGFLILLGVANLLGQFFM | |||||||||||||
8 | 6c08C | 0.17 | 0.14 | 4.74 | 5.40 | HHsearch | ---IVTIFAIWNTMMGTSILSIPWGIKQAGFTLGIIIIVLMGLLTLYCCYRVL--------------------VCKYYFG-----------GFGKWSSLVFSLVSLIGAMVVYWVLMSNFLFNTGKFIFNTEFDHWWSKTNTIPFYLILL--SASFFARFTFLGTISVIYLIFLVTYKAIQLGFHLESMFFVPEFRTLFPQLSGVLTLAFFIHNCIITLMKNNKHQE-NVR---DLSLAYLLVGLTYLYVGVLIFAAFPSCIEPNFLDNFPSSDILVFVARTFLLFQMTTVYPLLGYLVRVQLMGQ-------------LHVFVLNVFVVGAGVLMARFYPNIGSIIRYSGALCGLALVFVLPSLIHMVSLKR------WTSTLFHGFLILLGVANLLGQFF- | |||||||||||||
9 | 6c08C | 0.15 | 0.13 | 4.34 | 2.38 | PROSPECTOR2 | I---VTIFAIWNTMMGTSILSIPWGIKQAGFTLGIIIIVLMGLLTLYCCYRVL--------------------VCKYYFGGF-----------GKWSSLVFSLVSLIGAMVVYWVLMSNFLFNTGKFIFNTEREFDHWWSKTNTIPFYLILLSASFFARFTFLGTISVIYLIFLVTYKAIGFHLEFHSMFFVPEFRTLFPQLSGVLTLAFFIHNCIITLMKNNKHQE----NVRDLSLAYLLVGLTYLYVGVLIFAAFPECIEPNFLDNFPSSDILVFVARTFLLFQMTTVYPLLGYLVRVQLMG-------QLHVFV------LNVFVVGAGVLMARFYPNIGSIIRYSGALCGLALVFVLPSLIHMVSLKRWT------STLFHGFLILLGVANLLGQFFM | |||||||||||||
10 | 6c08C | 0.17 | 0.14 | 4.72 | 3.21 | SAM | ----VTIFAIWNTMMGTSILSIPWGIKQAGFTLGIIIIVLMGLLTLYCCYRVL--------------------VCKYYFG-----------GFGKWSSLVFSLVSLIGAMVVYWVLMSNFLFNTGKFIFNLEFDHWWSKTNTIPFYLILL--SASFFARFTFLGTISVIYLIFLVTYKAIQLGFHLEFMFFVPEFRTLFPQLSGVLTLAFFIHNCIITLMKNNKHQE-NVR---DLSLAYLLVGLTYLYVGVLIFAAFPSCIEPNFLDNFPSSDILVFVARTFLLFQMTTVYPLLGYLVRVQLMGQ-------------LHVFVLNVFVVGAGVLMARFYPNIGSIIRYSGALCGLALVFVLPSLIHMVSLKR------WTSTLFHGFLILLGVANLL----- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |