>PF00978 (438 residues) RDISLNVKDCRIDFSKSVQVPKERPVFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPD LTGTIDIEDTASLVVEKFWDAYVVKELSGTDGMAMTRESFSRWLSKQESSTVGQLADFNF VDLPAVDEYKHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLER IDTSKFLFYTRKTPTQIEEFFSDLDSSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLG IDEWLAEVWRQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDK VIKAAFCGDDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYIIHHDRGAIV YYDPLKLISKLGCKHIRDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGA FVYCSIIKYLSDKRLFKD |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | RDISLNVKDCRIDFSKSVQVPKERPVFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVVEKFWDAYVVKELSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDTSKFLFYTRKTPTQIEEFFSDLDSSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWRQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVIKAAFCGDDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYIIHHDRGAIVYYDPLKLISKLGCKHIRDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGAFVYCSIIKYLSDKRLFKD | |||||||||||||||||||
1 | 1sh0B | 0.10 | 0.10 | 3.53 | 1.62 | SPARKS-K | GSAPKLSTKTKFWRSSTAPLPPGTY---EPAYLGGKDPRVGPSLQQVMRDQLKPFTE--PRGKPPK-PSVLEAAKKTIINVLEQ---TIDPPDKWSF---AQACASLDSKANLMFEEGKNMTP----VYTGALKDELVKT---DKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKTHC--VTLPIRVGMNNEDGPIIFERHSRYR--YHYDADYSRWDSTQQRAVLAAALEIMVKFSEPHLAQVVAEDLLSPSVVDVG--DFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEY-GLKPTRPDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWETMIPHSQRPIQLMSLLGEAALHG-PAFYSKISKLVIAELKMDFYVPRQEPMFRWMRFDLSTWEG | |||||||||||||
2 | 3nahA | 0.13 | 0.12 | 4.07 | 2.34 | FFAS-3D | -------TKTMFWRTSPEKLPPGAW---EPYLGSKDERVDGPSLQQVMRDQLKPYSEPRG---LLPPQEILDAVCDAIENRL---ENTLEPQKPWTFKKACESLDKNTSDQATHANNMYEMGKSMRPIYTAALKDELV---KPDKIYGKIKKRLLWGSDLGTMIRAARAFGPFCDALKE--TCIFNPIRVGMSMEDGPFIFARHAN--FRYHMDADYTRWDSTQQRAILKRAGDIMVRLSPEPDLARVVMDDLLAPSLLDV-GDYKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVQESEFSFYGDDEVVSTNLELDMVKYTMALRR-YGLLPTRADKQGISFLRRAIVGDQFGWYGRLDRASIDRQLLFETLPGHAQRPSQLMALLGEAAMHG-EKYYRTVASRVSKQSGIE-MVVPRHRSVLRWV----RFGT | |||||||||||||
3 | 1sh0B | 0.10 | 0.09 | 3.46 | 1.93 | HHpred | ------STKTKFWRSSTAPLP---PGTYEPAYLGGKPRVKGPSLQQVMRDQLKPFTEPRG--KPPKP-SVLEAAKKTIINVLEQTID-PPDKWSFA-QACASLWNGETGKLADQASKALMFGKNMTPVYTGALKDELVKTDKI---YGKIKKRLLWGSDLATMIRCARAFGGLMDELKTHC--VTLPIRVGMNMNEDGPIIFEHS--RYRYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVADLLSPSVVD--VGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSESANSLFSFYGDDEIVSTDIKLDPEKL-TAKLKEYGLKPTRPDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPPHSQRPIQLMSLLGEAALHGPAFISKLVIA-ELKEGGMDFYVEPMFRWM-RF-SDLSTW-- | |||||||||||||
4 | 1sh0B | 0.11 | 0.10 | 3.74 | 1.34 | MUSTER | CGAPILGPGTKFWRSSTAPLPPGTY---EPAYLGGRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDFAQACASHPHHMRKNDCGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKT--DKIYGKIKK--LLWGSDLATMIRCARAFGGLMDELKTHCVTLPIRV--GMNNEDGPIIFERHSRYR--YHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDV-GDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSIQANSLFSFYGDDEIVSTDIKLD-PEKLTAKLKEYGLKPTLVISEDLTFLRRTVTRDPAGWFGKLEQSSILRQMYSETMIPHSQRPIQLMSLLGEAALHGPSKISKLVIAELKEGMDFYVPRQEPMFRWMRF--DLSTWEG | |||||||||||||
5 | 1sh0A | 0.10 | 0.10 | 3.52 | 1.85 | CNFpred | ---------TKFWRSSTAPLPP---GTYEPAYLGGKDPKGGPSLQQVMRDQLKPFTEPR---GKPPKPSVLEAAKKTIINVLE--QTIDPPDKWSFAQACASLDK-FTGKLADQASKANLMGKNMTPVYTGALKDELVKT---DKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKTHCV--TLPIRVGMNMNDGPIIFERHSRY--RYHYDADYSRWDSTQQRAVLAAALEIMVKFSEPHLAQVVAEDLLSPSVVDVG--DFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSIQANSLFSFYGDDEIVSTDIKLDPEKLTAKL-KEYGLKPTRP-LNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTR-IPHSQRPIQLMSLLGEAALH-GPAFYSKISKLVIAELGMDFYVPRQEPMFRWMRFSLSTWEG | |||||||||||||
6 | 2uutA | 0.11 | 0.11 | 3.91 | 1.40 | HHsearch-2 | KGLPVVPTGTRYHRSPAWPEE-QPGETHAPAPFGSGDKRYTFSQTEMLVNGLKPYTEPTA---GVPPQRAVTHVRSYIETIIGTHRS---PVL--TYQACGDYWDEYTGVLANHLEQADNKGIAPRNAYKLALKDELRPIEKN----KAGKRRLLWGCDAATTLIATAAFKAVATRLQVVTP--MTPVAVGINMDSVMQVMNDSL--KGGVLYCLDYSKWDSTQNPAVTAASLAILERFAEPHPIVSCAIEALSSPAEG-YVNDIKFVTRGGLPSGMPFTSVVNSINHMIYVAAAILQHNVETIHTYGGDCMYSVCPATAFHT-VLANLTSYGLKPTAIKTNTPVFLKRTFTQTPHGIRALLDITSITRQFYWLKANRRQARSAQLENALAYASQHGPVM-FDTVAIKTAQGEGLVLVNTNYDQALATYNAWFIGGTP | |||||||||||||
7 | 2uutA | 0.12 | 0.11 | 3.99 | 2.16 | Neff-PPAS | LDVGGMPTGTRYHRSPAWPEEQPGETHAPAPFGSGDKRY-TFSQTEMLVNGLKPYTEPTAGVPPQLLSRAVTHVRSYIETIIGTHRSPVLDYWDEEQQQYTGVLANHLEQAWDKANKGIAPR----NAYKLALKDELRP----IEKNKAGKRRLLWGCDAATTLIATAAFKAVATRLQVVTPMTPVAVGINMDSVQMQVMNDSL---KGGVLYCLDYSKWDSTQNPAVTAASLAILERFAEPHPIVSCAIEALSSPAEGYV-NDIKFVTRGGLPSGMPFTSVVNSINHMIYVAAAINVFQVETIHTYGGDCMYSVCPAASIFHTVLANLTSYGLKPTAIKPNTPVFLKRTFTQTPHGIRALLDITSITRQFYSPPAFDRQARSAQLENALAYASQHVMFDTVRQIAIKTAQGEGLVLVNTNYDQALATYNAWFIGGTP | |||||||||||||
8 | 1sh0B | 0.10 | 0.10 | 3.60 | 2.14 | HHsearch | PGSAPLSTKTKFWRSSTAPLP---PGTYEPAYLGGKD-PRVPSLQQVMDQLKPFTEPRGK---PPKP-SVLEAAKKTIINVLEQTID-PPDK--WSFAQCASCWNGESGKLADQASKALEEGKNMTPVYTGALKDELVKTDKI---YGKIKKRLLWGSDLATMIRCARAFGGLMDELKTHC--VTLPIRVGMNMNEDGPIIFEHSR--YRYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVV-DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSETANSLFSFYGDDEIVSTDIKLDPEKL-TAKLKEYGLKPTRPDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGIPHSQRPIQLMSLLGEAALHGPAF-YSKISKLELKEGGMDFYVQEPMFRWMRF-SDLSTWE- | |||||||||||||
9 | 1sh0A | 0.10 | 0.10 | 3.68 | 1.93 | PROSPECTOR2 | GTYC-GAPILGPGSAPKLSAPLPPGTYEPAYLGGKDPVKGGPSLQQVMRDQLKPFTEPR---GKPPKPSVLEAAKKTIINVL---EQTIDPPDKWSFAQANDCWNGESADQASKANLMFEEGKNMTPVYTGALKDELVKT---DKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKT--HCVTLPIRVGMNMNEDGPIIFERHS-RYRYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVG-DFTISINEGLPSGVPCTSQWNSIAHWLLTLCALIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKL-KEYGLKPTSEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMPSETMIPHSQRPIQLMSLLGEAALHGPASKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDRNLAP | |||||||||||||
10 | 1sh0B | 0.11 | 0.09 | 3.16 | 2.32 | SAM | ----------------------------EPAYLGGKDPRVKPSLQQVMRDQLKPFTERGKPPKPSVLEAAKKTIINVLEQTIDPPDKWSFHPHHMRK---NDCWNGESGKLADQASKMFEEGKNMTPVYTGALKDELVKTDK----IGKIKKRLLWGSDLATMIRCARAFGGLMDELKTHCV--TLPIRVGMNMNEDGPIIFEHS--RYRYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVV-DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSETANSLFSFYGDDEIVSTDIKLDPEKL-TAKLKEYGLKPTRPDKNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHSQRPIQLMSLLGEAALHGPA--------------------------------------- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |