Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | QFPFMVNAIAISIVVAIPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAYIIGIPFAIGAFIAGLLCAVTTGFLDDNSRLKRDTIMGIVFSGMFGAGLVLYVAIQSDVHLDHILFGDMLGISLRDIGQTTAIALVIALIIGLKWRDFLLHAFDPTQAKASGLRGGLLHYGLLCMIALTIVATLQSVGIILSISLLIAPGAIALLLVRRFIHALLLAVAVAIGCSAGGVWLAFYLDSAPAPTIVVLFTALFVVAFV |
1 | 2nq2A | 0.17 | 0.17 | 5.65 | 3.36 | SPARKS-K | | IFQVRLPRILTALCVGAGLALSGVVLQGIFRNPHIIGVTSGSAFGGTLAIFFGFSLFTSTILFGFGTLALVFLFSFKS-LLMLILIGMILSGLFSALVSLLQYISDLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSIGWVGL-IIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARSAEIPISILTALIGAPLFGVLVY |
2 | 5b57A | 0.17 | 0.16 | 5.41 | 2.03 | FFAS-3D | | -----APRVVLALLVGGGFGATGAAMLFRNPGLVG--VSSGAALGATTLIVLGPALPVAAFAGGLAVAALVYRLAASRGRLALLLAGIAINALVGAAIGLLTFVADDASLTFWSLGSLGGAQWPTLAAVAPCVALGGVLLVRERDALNALQLGETEALHLGVPVQRLKRRVLVAVALAVGALVSCAGIIGFIGLVA-PHCVRLACGPDQRIVLPGAALLGALLTLAADLAARTVDIPLGVLTALLGAPFFLALL- |
3 | 5b57A | 0.17 | 0.16 | 5.44 | 3.37 | HHpred | | -LDIRAPRVVLALLVGGGFGATGAAMLFRNADPGLVGVSSGAALGATTLIVLGPALPVAAFAGGLAVAALVYRLAASRRLALLLLAGIAINALVGAAIGLLTFVDALRSLTFWSLGSLGGAQWPTLAAVAPCVALGGVLLVRERDALNALQLGETEALHLGVPVQRLKRRVLVAVALAVGALVSCAGIIGFIGL-VAPHCVRLACGPDQRIVLPGAALLGALLTLAADLAARTADIPLGVLTALLGAPFFLALLW |
4 | 4g1uA | 0.18 | 0.17 | 5.64 | 2.02 | MUSTER | | WLNIRLPRVLLAVVVGCALAVSGTIMQG---GLLGISSGAALCVGLIIVMLALYSHMVGAFIGSLAISTIIFTLSRWGHGNRLLLAGIAINALCGAAVGVLTYISDDRQFSLWSMGSLGQAQWSTLLVASSLILPTCILGLLQARQLNLLQLGDEEAHYLGVNVRQAKLRLLLLSAILIGAAVAVSGVIGFIG-LVVPHLIRMRIGADHRWLLPGAALGGACLLLTADTLARTAEMPVGLLTSLLGGPYFLWLIL |
5 | 2nq2A | 0.17 | 0.17 | 5.65 | 1.72 | CNFpred | | IFQVRLPRILTALCVGAGLALSGVVLQGIFVNPHIIGVTSGSAFGGTLAIFFGFGLFTSTILFGFGTLALVFLFSFK-SLLMLILIGMILSGLFSALVSLLQYISKLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSIGWVG-LIIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARSLSIPISILTALIGAPLFGVLVY |
6 | 2nq2A | 0.17 | 0.17 | 5.55 | 3.16 | HHsearch-2 | | IFQVRLPRILTALCVGAGLALSGVVLIFRNVNPHIIGVTSGSAFGGTLAIFFGFGLFTSTILFGFGTLALVFLFSF-KSLLMLILIGMILSGLFSALVSLLQYITELPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSIGWVGL-IIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARDAEIPISILTALIGAPLFGVLVY |
7 | 2nq2A | 0.18 | 0.18 | 5.75 | 2.39 | Neff-PPAS | | -FQVRLPRILTALCVGAGLALSGVVLQGIFPHIIG--VTSGSAFGGTLAIFFGYGLFTSTILFGFGTLALVFLFSFK-SLLMLILIGMILSGLFSALVSLLQYISDTPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSIGWVG-LIIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARSLEIPISILTALIGAPLFGVLVY |
8 | 2nq2A | 0.17 | 0.17 | 5.54 | 4.82 | HHsearch | | IFQVRLPRILTALCVGAGLALSGVVLIFRNVNPHIIGVTSGSAFGGTLAIFFGFGLFTSTILFGFGTLALVFLFSF-KSLLMLILIGMILSGLFSALVSLLQYITELPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSIGWVGL-IIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARDAEIPISILTALIGAPLFGVLV- |
9 | 2nq2A | 0.17 | 0.16 | 5.44 | 2.27 | PROSPECTOR2 | | YPKILLPRILTALCVGAGLALSGVVLIFRNVNPHIIGVTSGSAFGGTLAIFFGFGLFTSTILFGFGTLALVFLFS-FKSLLMLILIGMILSGLFSALVSLLQYISDTEEIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSIGWVGL-IIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARSAEIPISILTALIGAPLFGVLVL |
10 | 5b57A | 0.16 | 0.16 | 5.32 | 2.28 | SAM | | -LDIRAPRVVLALLVGGGFGATGAAMLFRNADPGLVGVSSGAALGATTLIVLGPALPVAAFAGGLAVAALVYRLAASRGLPLLLLAGIAINALVGAAIGLLTFVDALRSLTFWSLGSLGGAQWPTLAAVAPCVALGGVLLVRERDALNALQLGETEALHLGVPVQRLKRRVLVAVALAVGALVSCAGIIGFIGL-VAPHCVRLACGPDQRIVLPGAALLGALLTLAADLAAAPADIPLGVLTALLGAPFFLA--- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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