>PF00324 (456 residues) HIQMIAIGGSIGTGLFVGSGSSLATGGPAPLIICYFLIGTMVFSSVQALGELSVAFPISG SFLSLTTRMVSPIWSFAMAWNYGLQWIVLLPLELVAAALTIGYWNNSVNGAAWVSIFYAL IVFINIFGVKGYGEAEFLFSAIKVIAVVGFVILGIVLNCGGGPVGGYIGGKYWHDPGAFN HGFKGFCGVFVSAAFAFAGTELIGLVAAETENPRKTLPKAAKQVFWRITLFYLVALTMVG LLVPYNDPRLIGNSDVSASPFVIAIRNAGIGGLPSVMNVVILVSVLSVGNSSVYGCSRTI ATMANQGFLPKCCGYIDRKGRPAVGVLITLVFGLLCFLAATPKQEDVFDWMMALSGLSSI FTWGTICLCHLRFRMALKAQGRSTDELSFTAMGGIWGSIWSVVLNVLVLIVQFWVALFPE GSADAYNFFQLYLNAAFVLFCIGVFLVWKRFKVTWI |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | HIQMIAIGGSIGTGLFVGSGSSLATGGPAPLIICYFLIGTMVFSSVQALGELSVAFPISGSFLSLTTRMVSPIWSFAMAWNYGLQWIVLLPLELVAAALTIGYWNNSVNGAAWVSIFYALIVFINIFGVKGYGEAEFLFSAIKVIAVVGFVILGIVLNCGGGPVGGYIGGKYWHDPGAFNHGFKGFCGVFVSAAFAFAGTELIGLVAAETENPRKTLPKAAKQVFWRITLFYLVALTMVGLLVPYNDPRLIGNSDVSASPFVIAIRNAGIGGLPSVMNVVILVSVLSVGNSSVYGCSRTIATMANQGFLPKCCGYIDRKGRPAVGVLITLVFGLLCFLAATPKQEDVFDWMMALSGLSSIFTWGTICLCHLRFRMALKAQGRSTDELSFTAMGGIWGSIWSVVLNVLVLIVQFWVALFPEGSADAYNFFQLYLNAAFVLFCIGVFLVWKRFKVTWI | |||||||||||||||||||
1 | 6f2gA | 0.16 | 0.15 | 4.95 | 3.00 | SPARKS-K | TALTVVVGTVIGAGIFFKPTAVYGAAGPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGGMMIYLEKVYGRWLGFLVGWAQMVYYPANIAALAIIFATQFVNLFALSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLL-------YPGGGVIRLVPFSVETHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPGKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLAGTD------TPAALVASHLFEGIGSKLVTIGILISVFGGINGYIISGLRVPYALATQKMLPDWFARINPKTLPINGGLVMLGIAIVMILTGQ------FNQLTDLIVFVIWFFITLTFIAVIILRKTQ-----PDIERPYRVPFYPVIPLIAIIGGLYIIFNTLIVQ-----------PKNAFIGILLTLIGIPIYFYCKKKYGS-- | |||||||||||||
2 | 3l1lA | 0.15 | 0.13 | 4.50 | 3.92 | FFAS-3D | -VTLMVSGAIMGSGVFLLPANLASTGGIA--IYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG-------------------WFWFRGETYMAAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAA------LRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKFGLVSSVSVIFTLVPYLYTCAALLLLGH---------GHFGKARPAYLAVTTIAFLYCIWAVVGSGAKE--------------VMWSFVTLMVITAMYALNYNRLHKN- | |||||||||||||
3 | 6f2gA | 0.16 | 0.15 | 4.95 | 5.13 | HHpred | TALTVVVGTVIGAGIFFKPTAVYGAAGPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGGMMIYLEKVYGRWLGFLVGWAQMVIYYPNIAALAIIFATQFVNLFADSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLLYP--GGG--V---IRLVPFSVETHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPGKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLA------GTDTPAALVASHLFEGIGSKLVTIGILISVFGGINGYIISGLRVPYALATQKMLPDWFARINKTNLPINGGLVMLGIAIVMILTGQ------FNQLTDLIVFVIWFFITLTFIAVIILRKTQPD-----IERPYRVPFYPVIPLIAIIGGLYIIFNTLIV--------QP---KNAFIGILLTLIGIPIYFYCKKKYGS-- | |||||||||||||
4 | 3gi9C | 0.17 | 0.15 | 4.99 | 2.34 | MUSTER | EAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDIITGALSILLWMSYVISIALFAKGFAGYFLPLIAPINIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLI----------TIHPSYVI-PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE-----NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVW-FKSTEGLYITSALGVLFALLFN------MEGVASITSAVFMVIYLFVILSHYILIDEVG--------------GRKEIVIFSFIVVLGVFLLLLYYQWITN-------RFVFYGIIATFIGVLIFEIIYRKVTKRTF | |||||||||||||
5 | 3gi8C | 0.16 | 0.15 | 4.87 | 2.64 | CNFpred | EAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDIITGALSILLWMSYVISIALFAKGFAGYFLPLIN-FNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIFAGLITIHPSYVIPDL-----------APSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIK-----ASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVW-FKSTEGLYITSALGVLFALLF------NMEGVASITSAVFMVIYLFVILSHYILIDEVGG--------------RKEIVIFSFIVVLGVFLLLLYYQWIT-------NRFVFYGIIATFIGVLIFEIIYRKVTKRTF | |||||||||||||
6 | 6f2gA | 0.16 | 0.15 | 4.95 | 2.62 | HHsearch-2 | TALTVVVGTVIGAGIFFKPTAVYGAAGPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGGMMIYLEKVYGRWLGFLVGWAQMVIYYANIAALAIIFATQFVNLFADSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLLYP--GGG--V---IRLVPFSVETHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPGKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLA------GTDTPAALVASHLFEGIGSKLVTIGILISVFGGINGYIISGLRVPYALATQKMLPDWFARINKTNLPINGGLVMLGIAIVMILTGQ------FNQLTDLIVFVIWFFITLTFIAVIILRKTQPD-----IERPYRVPFYPVIPLIAIIGGLYIIFNTLIVQ-----------PKNAFIGILLTLIGIPIYFYCKKKYGS-- | |||||||||||||
7 | 6f2gA | 0.16 | 0.15 | 5.00 | 3.26 | Neff-PPAS | TALTVVVGTVIGAGIFFKPTAVYGAAGPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGGMMIYLEKVYGRWLGFLVGWAQMVIYYPAIAALAIIFATQFVNLFSDSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLLYPGGG-------VIRLVPFSVETHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPGKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLAGTD------TPAALVASHLFEGIGSKLVTIGILISVFGGINGYIISGLRVPYALATQKMLPDWFARINPKNLPINGGLVMLGIAIVMILTGQ------FNQLTDLIVFVIWFFITLTFIAVIILRKTQPDI-----ERPYRVPFYPVIPLIAIIGGLYIIFNTLIVQ-----------PKNAFIGILLTLIGIPIYFYCKKKYGS-- | |||||||||||||
8 | 6f2gA | 0.16 | 0.15 | 4.95 | 4.13 | HHsearch | TALTVVVGTVIGAGIFFKPTAVYGAAGPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGGMMIYLEKVYGRWLGFLVGWAQMVIYYANIAALAIIFATQFVNLFALSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLLYP--GGG--V---IRLVPFSVETHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPGKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLA------GTDTPAALVASHLFEGIGSKLVTIGILISVFGGINGYIISGLRVPYALATQKMLPDWFARINKTNLPINGGLVMLGIAIVMILTGQ------FNQLTDLIVFVIWFFITLTFIAVIILRKTQPD-----IERPYRVPFYPVIPLIAIIGGLYIIFNTLIV--------Q---PKNAFIGILLTLIGIPIYFYCKKKYGS-- | |||||||||||||
9 | 5oqtA | 0.19 | 0.17 | 5.46 | 3.04 | PROSPECTOR2 | DLTMLGIGAIIGTGIFVLTGVAAAEHAGPALVLSFILSGLACVFAALCYAEFASTVPVSGSAYTYSYATFGELIAWILGWDLILEYGVASSAVAVGWSGYFQGLAKGTFIDLPAIIIVLFITFLLNLGAKKSARFNAVIVAIKVAVVLLFLAVGVWY------------VKPENWTPFMPYGFSGVATGAATVFFAYIGFDAVSTAAEEVRNPQRDMPIGIIVSLLVCTLLYIAVSLVLTGIVPYEQ-------LNVKNPVAFALNYIHQDWVAGFISLGAIAGITTVLLVMMYGQTRLFYAISRDGLLPKVFARISPTQVPYVNTWLTGAAVAVFAGIIP------LNKLAELTNIGTLFAFITVSIGVLVLRK-----TQPDLKRAFRVPFVPVVPILAVLFCGYLVL--------------QLPAMTWIGFVSWLLIGLVIYFIYGRKHSELN | |||||||||||||
10 | 6f2gA | 0.16 | 0.15 | 4.88 | 3.86 | SAM | TALTVVVGTVIGAGIFFKPTAVYGAAGPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGGMMIYLEKVYGRWLGFLVGWAQMVIYYANIAALAIIFATQFVNLFADSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLLYPGGGV-------IRLVPFSVETHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPGKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQL------AGTDTPAALVASHLFEGIGSKLVTIGILISVFGGINGYIISGLRVPYALATQKMLPDWFARINKTNLPINGGLVMLGIAIVMILTGQ------FNQLTDLIVFVIWFFITLTFIAVIILRKTQPDI-----ERPYRVPFYPVIPLIAIIGGLYIIFNTLI-----------VQPKNAFIGILLTLIGIPIYFYCKKKY---- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |