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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP

PDB CCD ID: VLN
Number of entries in BioLiP: 4
Chemical formula: C6 H14 N2 O3
InChI: InChI=1S/C6H14N2O3/c7-1-3-5(10)6(11)4(2-9)8-3/h3-6,8-11H,1-2,7H2/t3-,4-,5-,6+/m1/s1
InChIKey: NJOZFAFEQVQFJI-KAZBKCHUSA-N
SMILES:
SoftwareSMILES
OpenEye OEToolkits 2.0.7C(C1C(C(C(N1)CO)O)O)N
OpenEye OEToolkits 2.0.7C([C@@H]1[C@H]([C@H]([C@H](N1)CO)O)O)N
CACTVS 3.385NC[C@H]1N[C@H](CO)[C@H](O)[C@@H]1O
CACTVS 3.385NC[CH]1N[CH](CO)[CH](O)[CH]1O
Name:(2~{R},3~{R},4~{S},5~{R})-2-(aminomethyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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