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BioLiP Library
>rna
guucgcgaagcuucguggacauuuggucaauuugaaacaauacagagaugaucagcaguuccccugcauaaggaugaacc
guuuuacaaagagauuu

The query sequence (length=97) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5mps:6 99 97 1.0000 0.9798 1.0000 1.29e-46 5mq0:6
2 5lj3:V 97 97 1.0000 1.0000 1.0000 1.29e-46 5lj5:V
3 7dco:F 103 87 0.8969 0.8447 1.0000 4.67e-41 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6n:E, 6j6q:E, 5wsg:E, 5ylz:D
4 7b9v:6 102 87 0.8969 0.8529 1.0000 4.67e-41 6bk8:6, 6exn:6, 5lqw:6
5 5y88:D 101 86 0.8866 0.8515 1.0000 1.68e-40
6 5nrl:6 95 97 0.9278 0.9474 0.9278 1.02e-32
7 5tf6:B 71 70 0.7216 0.9859 1.0000 1.32e-31
8 5vsu:I 73 69 0.6907 0.9178 0.9710 3.69e-27
9 5zwm:F 99 87 0.8144 0.7980 0.9080 1.72e-25 5zwo:F
10 6aso:I 70 70 0.6804 0.9429 0.9429 2.22e-24
11 5gan:W 80 83 0.7732 0.9375 0.9036 2.87e-23
12 4n0t:B 65 70 0.6495 0.9692 0.9000 2.89e-18
13 5gap:W 56 63 0.5773 1.0000 0.8889 8.10e-14
14 5tf6:D 52 34 0.3505 0.6538 1.0000 1.36e-11
15 3jcm:D 45 48 0.4536 0.9778 0.9167 1.36e-11

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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