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BioLiP
>rna
gugguaaugcggccagguaacaaaucaauccucccacggugagcuuucuuuucaccauaauccaccuugggccuuuuuac
ucucgcguuguucggagcgggggcucaagauugaaaaaugcauugugaguucugcgcuaaagcaaaaaccuggggu

The query sequence (length=156) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ovj:3 156 156 1.0000 1.0000 1.0000 3.57e-79
2 8a3w:3 153 156 0.9808 1.0000 0.9808 4.66e-73
3 8a98:3 161 165 0.9744 0.9441 0.9212 1.32e-58
4 8rxh:L3 183 111 0.7051 0.6011 0.9910 1.72e-52 8rxx:L3
5 5t2a:E 169 156 0.8974 0.8284 0.8974 4.82e-48
6 6az3:3 177 111 0.6859 0.6045 0.9640 2.24e-46
7 5t5h:E 146 156 0.8846 0.9452 0.8846 8.07e-46
8 8ove:BE 166 168 0.9038 0.8494 0.8393 2.28e-36
9 8ova:BE 188 112 0.6474 0.5372 0.9018 8.19e-36
10 3jcs:3 184 67 0.4038 0.3424 0.9403 6.47e-22
11 4v8m:BE 210 54 0.3205 0.2381 0.9259 8.42e-16
12 4v8m:BE 210 58 0.3333 0.2476 0.8966 3.92e-14

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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