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BioLiP
>rna
gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagggccccugcgcaaggaugaaauucgugaagcg

The query sequence (length=78) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7abg:6 78 78 1.0000 1.0000 1.0000 3.56e-36
2 7abf:6 65 65 0.8333 1.0000 1.0000 6.00e-29
3 5o9z:6 90 89 0.9872 0.8556 0.8652 6.08e-19
4 6ahd:F 94 89 0.9872 0.8191 0.8652 6.08e-19 8qo9:6
5 6zym:6 79 46 0.5897 0.5823 1.0000 2.19e-18
6 5z56:F 93 46 0.5897 0.4946 1.0000 2.19e-18 5z57:F, 5z58:F
7 8q7n:6 78 46 0.5897 0.5897 1.0000 2.19e-18
8 6ff4:6 95 46 0.5897 0.4842 1.0000 2.19e-18 6ff7:6, 8i0p:F
9 8ch6:d 93 46 0.5897 0.4946 1.0000 2.19e-18 7qtt:d
10 8c6j:6 97 46 0.5897 0.4742 1.0000 2.19e-18 9fmd:6, 8i0r:F, 8i0s:F, 8i0t:F, 8i0u:F, 8i0v:F, 8i0w:F, 6icz:F, 6id0:F, 6id1:F, 6qdv:6, 8ro2:6, 7w59:F, 7w5a:F, 7w5b:F, 5xjc:F, 5yzg:F
11 7abi:6 91 46 0.5897 0.5055 1.0000 2.19e-18
12 7aav:6 73 46 0.5897 0.6301 1.0000 2.19e-18
13 5mqf:6 89 71 0.7692 0.6742 0.8451 1.03e-11

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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