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BioLiP Library
>rna
gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauggccccugcgcaaggaugacaca
uucgugaagcguu

The query sequence (length=93) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5z56:F 93 93 1.0000 1.0000 1.0000 2.05e-44 5z57:F, 5z58:F
2 8ch6:d 93 93 0.9785 0.9785 0.9785 4.43e-41 7qtt:d
3 5o9z:6 90 92 0.9677 1.0000 0.9783 5.73e-40
4 6ahd:F 94 92 0.9677 0.9574 0.9783 5.73e-40 8qo9:6
5 8c6j:6 97 97 1.0000 0.9588 0.9588 7.42e-39 9fmd:6, 8i0r:F, 8i0s:F, 8i0t:F, 8i0u:F, 8i0v:F, 8i0w:F, 6icz:F, 6id0:F, 6id1:F, 6qdv:6, 8ro2:6, 7w59:F, 7w5a:F, 7w5b:F, 5xjc:F, 5yzg:F
6 6ff4:6 95 95 0.9785 0.9579 0.9579 9.59e-38 6ff7:6, 8i0p:F
7 6zym:6 79 79 0.8495 1.0000 1.0000 1.24e-36
8 8q7n:6 78 78 0.8387 1.0000 1.0000 4.46e-36
9 7abi:6 91 93 0.9462 0.9670 0.9462 5.77e-35
10 7aav:6 73 75 0.7849 1.0000 0.9733 1.62e-30
11 8ro1:6 101 90 0.8817 0.8119 0.9111 9.73e-28
12 8ro0:6 90 88 0.8602 0.8889 0.9091 1.26e-26
13 5mqf:6 89 96 0.9140 0.9551 0.8854 2.11e-24
14 8r09:6 65 62 0.6452 0.9231 0.9677 2.72e-23 8r0b:6
15 8rm5:6 64 61 0.6344 0.9219 0.9672 9.80e-23
16 8h6k:6A 60 58 0.6022 0.9333 0.9655 4.56e-21
17 8h6e:6A 59 57 0.5914 0.9322 0.9649 1.64e-20 8h6l:6A, 8qzs:6
18 8qoz:6 48 48 0.5161 1.0000 1.0000 2.12e-19 8qpb:6
19 8qpa:6 47 47 0.5054 1.0000 1.0000 7.63e-19
20 3jb9:N 90 52 0.5376 0.5556 0.9615 2.74e-18
21 7abg:6 78 46 0.4946 0.5897 1.0000 2.74e-18
22 7abf:6 65 46 0.4946 0.7077 1.0000 2.74e-18
23 8qpe:6 43 43 0.4624 1.0000 1.0000 1.28e-16
24 8r0a:6 59 53 0.5269 0.8305 0.9245 2.14e-14
25 8h6j:6A 54 49 0.4946 0.8519 0.9388 2.14e-14
26 8qpk:6 43 38 0.4086 0.8837 1.0000 7.68e-14
27 6qx9:6 53 48 0.4731 0.8302 0.9167 1.29e-11 8qxd:6, 8r08:6
28 6ah0:F 69 51 0.4946 0.6667 0.9020 1.29e-11
29 6qw6:6 42 35 0.3656 0.8095 0.9714 1.66e-10
30 8qp8:6 37 34 0.3548 0.8919 0.9706 5.98e-10 8qp9:6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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