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BioLiP
>rna
gugcucgcuucggcagcacauauacuaaaauuggaacgauacagagaagauuagcauccccugcgcaaggaug

The query sequence (length=73) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7abi:6 91 73 1.0000 0.8022 1.0000 1.96e-33
2 7aav:6 73 73 1.0000 1.0000 1.0000 1.96e-33
3 6zym:6 79 75 1.0000 0.9241 0.9733 1.18e-30
4 5z56:F 93 75 1.0000 0.7849 0.9733 1.18e-30 5z57:F, 5z58:F
5 8q7n:6 78 75 1.0000 0.9359 0.9733 1.18e-30
6 5o9z:6 90 75 1.0000 0.8111 0.9733 1.18e-30
7 6ff4:6 95 75 1.0000 0.7684 0.9733 1.18e-30 6ff7:6, 8i0p:F
8 8ch6:d 93 75 1.0000 0.7849 0.9733 1.18e-30 7qtt:d
9 8c6j:6 97 75 1.0000 0.7526 0.9733 1.18e-30 9fmd:6, 8i0r:F, 8i0s:F, 8i0t:F, 8i0u:F, 8i0v:F, 8i0w:F, 6icz:F, 6id0:F, 6id1:F, 6qdv:6, 8ro2:6, 7w59:F, 7w5a:F, 7w5b:F, 5xjc:F, 5yzg:F
10 6ahd:F 94 75 1.0000 0.7766 0.9733 1.18e-30 8qo9:6
11 7abg:6 78 46 0.6301 0.5897 1.0000 2.00e-18
12 7abf:6 65 46 0.6301 0.7077 1.0000 2.00e-18
13 5mqf:6 89 75 0.9041 0.7416 0.8800 9.32e-17

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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