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BioLiP
>rna
ggucacgcacagggcaaaccauucgaaagagugggacgcaaagccuccggccuaaaccauugcacuccgguagguagcgg
gguuaccgaug

The query sequence (length=91) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3mxh:R 92 91 1.0000 0.9891 1.0000 2.58e-43 3ucu:R, 3ucz:R
2 3irw:R 91 91 1.0000 1.0000 1.0000 2.58e-43
3 3mur:R 92 91 0.9890 0.9783 0.9890 1.20e-41 3ud3:R, 3ud4:R
4 3mum:R 92 91 0.9890 0.9783 0.9890 1.20e-41
5 3muv:R 91 91 0.9780 0.9780 0.9780 5.58e-40
6 3mut:R 92 91 0.9780 0.9674 0.9780 5.58e-40
7 3iwn:A 93 92 0.9670 0.9462 0.9565 4.34e-36 3iwn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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