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BioLiP
>rna
ggucaauuugaaacaauacagagaugaucagcgguuccccuggaugaaccguuuuacaaagagac

The query sequence (length=65) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4n0t:B 65 65 1.0000 1.0000 1.0000 4.68e-29
2 5tf6:B 71 71 0.9846 0.9014 0.9014 4.74e-19
3 5y88:D 101 70 0.9692 0.6238 0.9000 1.71e-18
4 5mps:6 99 70 0.9692 0.6364 0.9000 1.71e-18 5mq0:6
5 5lj3:V 97 70 0.9692 0.6495 0.9000 1.71e-18 5lj5:V
6 7dco:F 103 70 0.9692 0.6117 0.9000 1.71e-18 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6n:E, 6j6q:E, 5wsg:E, 5ylz:D
7 7b9v:6 102 70 0.9692 0.6176 0.9000 1.71e-18 6bk8:6, 6exn:6, 5lqw:6
8 5vsu:I 73 65 0.9077 0.8082 0.9077 2.21e-17
9 6aso:I 70 65 0.9077 0.8429 0.9077 2.21e-17
10 5tf6:D 52 32 0.4923 0.6154 1.0000 1.03e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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