BioLiP

>rna
gggggaaucccuucugcagcaccguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaa
aguga

The query sequence (length=85) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	7qqv:A	85	85	1.0000	1.0000	1.0000	5.11e-40
2	7qqs:A	84	84	0.9882	1.0000	1.0000	1.84e-39	7qqt:A, 7qqu:A, 7qqx:A, 7qqz:A, 7qr5:A
3	7qqw:A	81	81	0.9529	1.0000	1.0000	8.56e-38
4	7qr8:A	85	64	0.7529	0.7529	1.0000	2.41e-28
5	7z4d:F	77	63	0.7412	0.8182	1.0000	8.68e-28
6	7z4d:A	75	63	0.7412	0.8400	1.0000	8.68e-28
7	4zt0:B	72	62	0.7294	0.8611	1.0000	3.12e-27	4zt0:D, 4zt9:B, 4zt9:D
8	7zo1:A	85	62	0.7294	0.7294	1.0000	3.12e-27
9	7z4g:A	91	62	0.7294	0.6813	1.0000	3.12e-27
10	8ye6:C	92	62	0.7294	0.6739	1.0000	3.12e-27	7z4h:A
11	8t78:B	89	62	0.7294	0.6966	1.0000	3.12e-27
12	8t77:B	89	62	0.7294	0.6966	1.0000	3.12e-27	8t79:B
13	8t6y:B	88	62	0.7294	0.7045	1.0000	3.12e-27
14	8t6t:B	95	62	0.7294	0.6526	1.0000	3.12e-27
15	8t6s:B	90	62	0.7294	0.6889	1.0000	3.12e-27	7z4c:A
16	8t6p:B	88	62	0.7294	0.7045	1.0000	3.12e-27	8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
17	7s4v:B	98	62	0.7294	0.6327	1.0000	3.12e-27	7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
18	7s4u:B	97	62	0.7294	0.6392	1.0000	3.12e-27
19	7qr1:A	83	65	0.7529	0.7711	0.9846	3.12e-27
20	7qr0:A	82	65	0.7529	0.7805	0.9846	3.12e-27
21	7qqq:A	83	62	0.7294	0.7470	1.0000	3.12e-27
22	7ox9:A	84	62	0.7294	0.7381	1.0000	3.12e-27	7qqo:A, 7qr7:A
23	7ox8:A	84	65	0.7529	0.7619	0.9846	3.12e-27
24	4oo8:B	97	62	0.7294	0.6392	1.0000	3.12e-27	4oo8:E
25	6o0z:B	96	62	0.7294	0.6458	1.0000	3.12e-27	8t6x:B, 7z4i:A, 7z4l:A
26	6o0x:B	98	62	0.7294	0.6327	1.0000	3.12e-27	6o0y:B
27	6ifo:D	90	62	0.7294	0.6889	1.0000	3.12e-27
28	6ifo:C	88	62	0.7294	0.7045	1.0000	3.12e-27	5xbl:B
29	5fq5:A	83	62	0.7294	0.7470	1.0000	3.12e-27
30	6ai6:B	81	62	0.7294	0.7654	1.0000	3.12e-27	5b2r:A, 5b2s:A, 5b2t:A
31	8ygj:B	136	61	0.7176	0.4485	1.0000	1.12e-26
32	5y36:B	99	61	0.7176	0.6162	1.0000	1.12e-26
33	8wuv:B	126	61	0.7176	0.4841	1.0000	1.12e-26
34	8wuu:B	111	61	0.7176	0.5495	1.0000	1.12e-26
35	8wut:B	112	61	0.7176	0.5446	1.0000	1.12e-26
36	8wus:B	115	61	0.7176	0.5304	1.0000	1.12e-26
37	5vw1:C	73	61	0.7176	0.8356	1.0000	1.12e-26
38	6vpc:A	81	61	0.7176	0.7531	1.0000	1.12e-26
39	4un4:A	82	61	0.7176	0.7439	1.0000	1.12e-26	4un5:A
40	7s38:R	87	61	0.7176	0.7011	1.0000	1.12e-26
41	7s36:R	87	61	0.7176	0.7011	1.0000	1.12e-26	8t6o:B
42	7qqp:A	84	61	0.7176	0.7262	1.0000	1.12e-26	7qqr:A
43	7oxa:A	81	61	0.7176	0.7531	1.0000	1.12e-26
44	7ox7:A	81	64	0.7412	0.7778	0.9844	1.12e-26
45	8kal:E	95	61	0.7176	0.6421	1.0000	1.12e-26
46	8kak:A	94	61	0.7176	0.6489	1.0000	1.12e-26	8kak:E, 8kal:A, 8kam:A
47	8kag:A	98	61	0.7176	0.6224	1.0000	1.12e-26
48	6k4s:A	80	61	0.7176	0.7625	1.0000	1.12e-26	6k4u:A
49	6k4p:A	82	61	0.7176	0.7439	1.0000	1.12e-26
50	8g1i:B	98	61	0.7176	0.6224	1.0000	1.12e-26
51	5fw1:A	81	61	0.7176	0.7531	1.0000	1.12e-26	5fw2:A, 5fw3:A, 6k3z:A, 6k4q:A, 6k57:A, 4un3:A
52	6aeb:A	95	61	0.7176	0.6421	1.0000	1.12e-26	6aeb:E, 6aeg:A
53	8ye9:C	90	62	0.7059	0.6667	0.9677	2.43e-23
54	7v59:C	115	46	0.5412	0.4000	1.0000	2.45e-18	7v59:G
55	8fzt:B	69	46	0.5412	0.6667	1.0000	2.45e-18
56	5f9r:A	116	46	0.5412	0.3966	1.0000	2.45e-18	6mcb:B, 6mcc:B, 5vzl:B
57	8kah:I	63	45	0.5294	0.7143	1.0000	8.80e-18	8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J

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