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BioLiP
>rna
ggggcuguuuaccaggucagguccgaaaggaagcagccaaggcaguucc

The query sequence (length=49) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2pxd:B 49 49 1.0000 1.0000 1.0000 2.48e-20
2 2pxp:B 49 49 0.9796 0.9796 0.9796 1.15e-18
3 2pxq:B 49 49 0.9592 0.9592 0.9592 5.36e-17
4 2pxf:B 49 49 0.9592 0.9592 0.9592 5.36e-17
5 2pxe:B 49 49 0.9592 0.9592 0.9592 5.36e-17
6 2pxb:B 49 46 0.9184 0.9184 0.9783 5.36e-17
7 2pxu:B 49 45 0.8980 0.8980 0.9778 1.93e-16
8 2pxt:B 49 42 0.8571 0.8571 1.0000 1.93e-16
9 2xkv:B 96 41 0.8367 0.4271 1.0000 6.93e-16
10 2j28:8 74 41 0.8367 0.5541 1.0000 6.93e-16
11 1dul:B 49 41 0.8367 0.8367 1.0000 6.93e-16 1hq1:B, 3lqx:B
12 2pxv:B 49 39 0.7959 0.7959 1.0000 8.97e-15
13 2pxl:B 47 43 0.8571 0.8936 0.9767 8.97e-15
14 2pxk:B 49 39 0.7959 0.7959 1.0000 8.97e-15

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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