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BioLiP
>rna
gggaugcguaggauaggugggagccugugaacccccgccuccgggugggggggaggcgccggugaaauaccacccuuccc

The query sequence (length=80) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5npm:B 80 80 1.0000 1.0000 1.0000 2.84e-37 4qg3:B, 4qvi:B, 3u4m:B, 3u56:B, 3umy:B
2 5zlu:V 2875 72 0.9000 0.0250 1.0000 7.96e-33
3 4zer:2A 2869 72 0.9000 0.0251 1.0000 7.96e-33
4 4zer:1A 2824 72 0.9000 0.0255 1.0000 7.96e-33
5 4xej:B23S 2876 72 0.9000 0.0250 1.0000 7.96e-33
6 4xej:A23S 2876 72 0.9000 0.0250 1.0000 7.96e-33
7 4wzo:14 2877 72 0.9000 0.0250 1.0000 7.96e-33
8 4wzo:1H 2902 72 0.9000 0.0248 1.0000 7.96e-33
9 4wqf:CA 2848 72 0.9000 0.0253 1.0000 7.96e-33 4wqy:CA
10 4wqf:AA 2852 72 0.9000 0.0252 1.0000 7.96e-33 4wqy:AA
11 4wq1:14 2907 72 0.9000 0.0248 1.0000 7.96e-33 4wr6:14
12 4w2h:BA 2822 72 0.9000 0.0255 1.0000 7.96e-33 4w2i:BA
13 4w2e:A 2873 72 0.9000 0.0251 1.0000 7.96e-33
14 1vy4:BA 2819 72 0.9000 0.0255 1.0000 7.96e-33 1vy5:BA, 1vy6:BA, 1vy7:BA, 4w2g:BA
15 4v9q:AA 2832 72 0.9000 0.0254 1.0000 7.96e-33 4v9q:CA
16 4v9h:BA 2859 72 0.9000 0.0252 1.0000 7.96e-33
17 4v9b:DA 2906 72 0.9000 0.0248 1.0000 7.96e-33
18 4v97:DA 2824 72 0.9000 0.0255 1.0000 7.96e-33
19 4v97:BA 2810 72 0.9000 0.0256 1.0000 7.96e-33
20 5v8i:2A 2858 72 0.9000 0.0252 1.0000 7.96e-33
21 5v8i:1A 2862 72 0.9000 0.0252 1.0000 7.96e-33
22 4v8y:CN 87 72 0.9000 0.8276 1.0000 7.96e-33
23 4v8q:AA 2901 72 0.9000 0.0248 1.0000 7.96e-33
24 4v8j:BA 2803 72 0.9000 0.0257 1.0000 7.96e-33 4v8j:DA
25 4v8i:DA 2798 72 0.9000 0.0257 1.0000 7.96e-33
26 4v8i:BA 2827 72 0.9000 0.0255 1.0000 7.96e-33
27 4v8h:DA 2814 72 0.9000 0.0256 1.0000 7.96e-33
28 4v8h:BA 2837 72 0.9000 0.0254 1.0000 7.96e-33
29 4v8g:DA 2814 72 0.9000 0.0256 1.0000 7.96e-33
30 4v8g:BA 2809 72 0.9000 0.0256 1.0000 7.96e-33
31 4v8a:AA 2827 72 0.9000 0.0255 1.0000 7.96e-33 4v8a:BA
32 4v87:DA 2907 72 0.9000 0.0248 1.0000 7.96e-33 4v8b:DA, 4v8d:DA, 4v8e:CA, 4v8f:DA
33 4v7m:DA 2775 72 0.9000 0.0259 1.0000 7.96e-33
34 4v7m:BA 2789 72 0.9000 0.0258 1.0000 7.96e-33
35 4v7l:DA 2800 72 0.9000 0.0257 1.0000 7.96e-33
36 4v7l:BA 2800 72 0.9000 0.0257 1.0000 7.96e-33
37 4v7j:AA 2848 72 0.9000 0.0253 1.0000 7.96e-33 4v7j:BA, 4v7k:AA, 4v7k:BA, 4v8n:BA, 4v8n:DA, 4v8x:BA, 4v8x:DA
38 4v6g:DA 2886 72 0.9000 0.0249 1.0000 7.96e-33
39 4v6g:BA 2885 72 0.9000 0.0250 1.0000 7.96e-33
40 4v63:BA 2879 72 0.9000 0.0250 1.0000 7.96e-33 4v63:DA, 4v67:BA, 4v67:DA, 4v7p:BA, 4v7p:CA, 4v9j:BA, 4v9j:DA, 4v9k:BA, 4v9k:DA, 4v9l:BA, 4v9l:DA, 4v9m:BA, 4v9m:DA, 4w29:BA, 4w29:DA
41 4v5l:BA 2901 72 0.9000 0.0248 1.0000 7.96e-33 4v5p:BA, 4v5p:DA, 4v5q:BA, 4v5q:DA, 4v5r:BA, 4v5r:DA, 4v5s:BA, 4v5s:DA, 4v8o:BA
42 4v5e:BA 2886 72 0.9000 0.0249 1.0000 7.96e-33 4v5e:DA
43 4v5c:BA 2807 72 0.9000 0.0257 1.0000 7.96e-33 4v5c:DA, 4v5d:BA, 4v5d:DA, 4v5k:BA, 4v5k:DA, 4v9i:BA, 4v9i:DA, 4wt8:C1, 4wt8:D1
44 4v4i:w 2889 72 0.9000 0.0249 1.0000 7.96e-33 4v4j:w
45 6qnr:14 2876 72 0.9000 0.0250 1.0000 7.96e-33
46 6qnr:1H 2890 72 0.9000 0.0249 1.0000 7.96e-33
47 6qnq:14 2879 72 0.9000 0.0250 1.0000 7.96e-33
48 6qnq:1H 2879 72 0.9000 0.0250 1.0000 7.96e-33
49 6oxa:YA 2875 72 0.9000 0.0250 1.0000 7.96e-33 4w4g:YA, 4ypb:YA, 4yzv:YA, 4zsn:YA
50 6otr:YA 2878 72 0.9000 0.0250 1.0000 7.96e-33 6oxi:YA
51 6otr:RA 2891 72 0.9000 0.0249 1.0000 7.96e-33 6oxa:RA, 6oxi:RA, 4w4g:RA, 4ypb:RA, 4yzv:RA, 4zsn:RA
52 6ndk:RA 2870 72 0.9000 0.0251 1.0000 7.96e-33 6ndk:YA
53 5ndj:14 2909 72 0.9000 0.0248 1.0000 7.96e-33 5ndk:14, 4v6f:AA, 4v8c:BA, 4v9a:DA, 4wqr:14, 4wra:14, 4wsd:14, 4wsm:14, 4wt1:14, 4wu1:14, 4wzd:14
54 6n1d:A23S 2879 72 0.9000 0.0250 1.0000 7.96e-33 6n1d:B23S
55 5j8b:A 2874 72 0.9000 0.0251 1.0000 7.96e-33
56 5ibb:1H 2841 72 0.9000 0.0253 1.0000 7.96e-33
57 5ib8:1H 2831 72 0.9000 0.0254 1.0000 7.96e-33
58 5ib7:1H 2860 72 0.9000 0.0252 1.0000 7.96e-33
59 5hau:2A 2868 72 0.9000 0.0251 1.0000 7.96e-33 4wpo:CA, 4wqu:CA
60 6gzq:A1 2912 72 0.9000 0.0247 1.0000 7.96e-33 6gzx:A1, 6gzx:A2, 6gzz:A1, 6gzz:A2, 5ndj:1H, 5ndk:1H, 4v6f:DA, 4v87:AA, 4v8b:BA, 4v8c:AA, 4v8d:BA, 4v8e:AA, 4v8f:AA, 4v9a:BA, 4v9b:BA, 4wq1:1H, 4wqr:1H, 4wr6:1H, 4wra:1H, 4wro:1H, 4wsd:1H, 4wsm:1H, 4wt1:1H, 4wu1:1H, 4wzd:1H
61 6gsl:1H 2895 72 0.9000 0.0249 1.0000 7.96e-33
62 8fon:RA 2881 72 0.9000 0.0250 1.0000 7.96e-33 6nsh:RA, 6nta:RA, 6nuo:RA
63 5e81:1H 2885 72 0.9000 0.0250 1.0000 7.96e-33
64 5e7k:1H 2833 72 0.9000 0.0254 1.0000 7.96e-33 5el4:1H, 5el6:1H, 5el7:1H
65 5d8b:VC 2879 72 0.9000 0.0250 1.0000 7.96e-33 5d8b:ZC
66 6cfk:2A 2867 72 0.9000 0.0251 1.0000 7.96e-33 6cfl:2A, 5czp:YA, 5czp:RA, 6czr:2A, 5dfe:YA, 5dfe:RA, 5dox:2A, 5f8k:2A, 8fc1:2A, 8fc2:2A, 8fc3:2A, 8fc4:2A, 8fc5:2A, 8fc6:2A, 5fdu:2A, 5fdv:2A, 5j30:RA, 5j30:YA, 5j3c:RA, 5j3c:YA, 7md7:2A, 6ord:RA, 6ord:YA, 7rqa:2A, 7rqb:2A, 7rqc:2A, 7rqd:2A, 7rqe:2A, 8t8b:2A, 8t8c:2A, 5uq7:A, 5uq8:A, 8vtw:2A, 8vty:2A, 6xhx:2A, 4y4o:2A
67 6cfk:1A 2872 72 0.9000 0.0251 1.0000 7.96e-33 6cfl:1A, 6czr:1A, 5dox:1A, 5f8k:1A, 8fc1:1A, 8fc2:1A, 8fc3:1A, 8fc4:1A, 8fc5:1A, 8fc6:1A, 5fdu:1A, 5fdv:1A, 6fkr:1A, 6fkr:2A, 5hau:1A, 7md7:1A, 7rqa:1A, 7rqb:1A, 7rqc:1A, 7rqd:1A, 7rqe:1A, 8t8b:1A, 8t8c:1A, 8vtw:1A, 8vty:1A, 4wpo:AA, 4wqu:AA, 6xhx:1A, 4y4o:1A
68 6c5l:BA 2901 72 0.9000 0.0248 1.0000 7.96e-33 6c5l:DA, 4v5f:BA, 4v5f:DA, 4v5g:BA, 4v5g:DA, 4v5j:BA, 4v5j:DA, 4v5m:BA, 4v5n:BA, 4v8u:BA, 4v8u:DA
69 6buw:YA 2883 72 0.9000 0.0250 1.0000 7.96e-33 6bz6:YA, 6bz7:YA, 6bz8:YA, 8fom:YA, 8fon:YA, 4l47:YA, 4l71:YA, 4lel:YA, 4lfz:YA, 4lnt:YA, 4lsk:YA, 4lt8:YA, 6nsh:YA, 6nta:YA, 6nuo:YA, 6nwy:YA, 6o3m:YA, 6of6:YA, 6oj2:YA, 6ope:YA, 6osi:YA, 4p6f:YA, 4p70:YA, 5vpo:YA, 5vpp:YA, 1vvj:RA
70 6buw:RA 2882 72 0.9000 0.0250 1.0000 7.96e-33 6bz6:RA, 6bz7:RA, 6bz8:RA, 8fom:RA, 4l47:RA, 4l71:RA, 4lel:RA, 4lfz:RA, 4lnt:RA, 4lsk:RA, 4lt8:RA, 6nwy:RA, 6o3m:RA, 6of6:RA, 6oj2:RA, 6ope:RA, 6osi:RA, 4p6f:RA, 4p70:RA, 4tua:RA, 4tua:YA, 4tub:RA, 4tub:YA, 4tuc:RA, 4tuc:YA, 4tud:RA, 4tud:YA, 4tue:RA, 4tue:YA, 5vpo:RA, 5vpp:RA, 1vvj:YA
71 6b4v:B 2880 72 0.9000 0.0250 1.0000 7.96e-33 6b4v:FB, 6boh:B, 6boh:GB, 6bok:B, 6bok:EB, 5j4d:B, 5j4d:GB
72 9b00:2A 2800 72 0.9000 0.0257 1.0000 7.96e-33 6cae:2A, 6cfj:2A, 8cvj:2A, 8cvk:2A, 8cvl:2A, 5doy:2A, 8ekb:2A, 8ev6:2A, 8ev7:2A, 8g29:2A, 8g2a:2A, 8g2b:2A, 8g2c:2A, 8g2d:2A, 5j4b:2A, 5j4c:2A, 7jql:2A, 7jqm:2A, 6n9e:2A, 6n9f:2A, 6nd5:2A, 6nd6:2A, 6o97:2A, 6of1:2A, 7rq8:2A, 7rq9:2A, 7u2h:2A, 7u2i:2A, 7u2j:2A, 6ucq:2A, 8ud6:2A, 8ud7:2A, 8ud8:2A, 6uo1:2A, 8uvr:2A, 8uvs:2A, 5vp2:2A, 8vtu:2A, 8vtv:2A, 8vtx:2A, 1vy4:DA, 1vy5:DA, 1vy6:DA, 1vy7:DA, 4w2f:DA, 4w2g:DA, 4w2h:DA, 4w2i:DA, 5w4k:2A, 5wis:2A, 5wit:2A, 6xhv:2A, 6xhw:2A, 6xhy:2A, 6xqd:2A, 6xqe:2A, 4y4p:2A, 4z3s:2A
73 9b00:1A 2871 72 0.9000 0.0251 1.0000 7.96e-33 6cae:1A, 6cfj:1A, 8cvj:1A, 8cvk:1A, 8cvl:1A, 5doy:1A, 8ekb:1A, 8ev6:1A, 8ev7:1A, 8g29:1A, 8g2a:1A, 8g2b:1A, 8g2c:1A, 8g2d:1A, 5j4b:1A, 5j4c:1A, 7jql:1A, 7jqm:1A, 6n9e:1A, 6n9f:1A, 6nd5:1A, 6nd6:1A, 6o97:1A, 6of1:1A, 7rq8:1A, 7rq9:1A, 7u2h:1A, 7u2i:1A, 7u2j:1A, 6ucq:1A, 8ud6:1A, 8ud7:1A, 8ud8:1A, 6uo1:1A, 8uvr:1A, 8uvs:1A, 5vp2:1A, 8vtu:1A, 8vtv:1A, 8vtx:1A, 4w2f:BA, 5w4k:1A, 5wis:1A, 5wit:1A, 6xhv:1A, 6xhw:1A, 6xhy:1A, 6xqd:1A, 6xqe:1A, 4y4p:1A, 4z3s:1A
74 7azs:23SB 2875 72 0.9000 0.0250 1.0000 7.96e-33
75 7azo:23SB 2873 72 0.9000 0.0251 1.0000 7.96e-33
76 7azo:23SA 2889 72 0.9000 0.0249 1.0000 7.96e-33 7azs:23SA
77 5a9z:AA 2889 72 0.9000 0.0249 1.0000 7.96e-33 5aa0:AA, 5imq:D, 5imr:D, 1ml5:a, 4v42:BA, 4v4x:BA, 4v4y:BA, 4v4z:BA
78 4v68:BA 2852 72 0.8875 0.0249 0.9861 1.33e-30
79 6gsl:14 2895 72 0.8875 0.0245 0.9861 1.33e-30
80 5ibb:14 2810 69 0.8500 0.0242 0.9855 6.20e-29
81 5ib8:14 2825 69 0.8500 0.0241 0.9855 6.20e-29
82 5ib7:14 2826 69 0.8500 0.0241 0.9855 6.20e-29
83 6gsj:14 2811 69 0.8500 0.0242 0.9855 6.20e-29 6gsk:14
84 5e81:14 2855 69 0.8500 0.0238 0.9855 6.20e-29
85 5e7k:14 2861 72 0.8750 0.0245 0.9722 6.20e-29 5el4:14, 5el5:14, 5el6:14, 5el7:14
86 5el5:1H 2830 72 0.8625 0.0244 0.9583 1.04e-26
87 4v4p:AA 2872 48 0.6000 0.0167 1.0000 1.75e-19

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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