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BioLiP
>rna
ggcuacguagcucaguugguuagagcacaucacucauaaugauggggucacagguucgaaucccgucguagccacca

The query sequence (length=77) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7uo1:C 82 77 1.0000 0.9390 1.0000 1.26e-35
2 6q97:8 77 77 1.0000 1.0000 1.0000 1.26e-35 4v7b:AW, 4v9j:AW, 4v9j:CW, 4v9k:AW, 4v9k:CW, 4v9l:AW, 4v9l:CW, 4v9m:AW, 4v9m:CW, 4w29:AW, 4w29:CW
3 7q4k:D2 76 77 0.9870 1.0000 0.9870 2.11e-33
4 5mrc:bb 76 77 0.9870 1.0000 0.9870 2.11e-33 5mre:bb, 5mrf:bb

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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