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BioLiP
>rna
gcuagaaauagcaagaacuugaaaaaguggcaccgagucggugcuu

The query sequence (length=46) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7s37:R 46 46 1.0000 1.0000 1.0000 1.04e-18
2 7z4g:A 91 31 0.6739 0.3407 1.0000 2.27e-10
3 8ye9:C 90 31 0.6739 0.3444 1.0000 2.27e-10
4 8ye6:C 92 31 0.6739 0.3370 1.0000 2.27e-10 7z4h:A
5 7v59:C 115 31 0.6739 0.2696 1.0000 2.27e-10 7v59:G
6 8t78:B 89 31 0.6739 0.3483 1.0000 2.27e-10
7 8t77:B 89 31 0.6739 0.3483 1.0000 2.27e-10 8t79:B
8 8t6y:B 88 31 0.6739 0.3523 1.0000 2.27e-10
9 8t6t:B 95 31 0.6739 0.3263 1.0000 2.27e-10
10 8t6s:B 90 31 0.6739 0.3444 1.0000 2.27e-10 7z4c:A
11 8t6p:B 88 31 0.6739 0.3523 1.0000 2.27e-10 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
12 7s4v:B 98 31 0.6739 0.3163 1.0000 2.27e-10 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
13 7s4u:B 97 31 0.6739 0.3196 1.0000 2.27e-10
14 6o0z:B 96 31 0.6739 0.3229 1.0000 2.27e-10 8t6x:B, 7z4i:A, 7z4l:A
15 6o0x:B 98 31 0.6739 0.3163 1.0000 2.27e-10 6o0y:B
16 8kah:I 63 31 0.6739 0.4921 1.0000 2.27e-10 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J
17 6ifo:D 90 31 0.6739 0.3444 1.0000 2.27e-10
18 6ifo:C 88 31 0.6739 0.3523 1.0000 2.27e-10 5xbl:B
19 8g1i:B 98 31 0.6739 0.3163 1.0000 2.27e-10
20 8fzt:B 69 31 0.6739 0.4493 1.0000 2.27e-10
21 5f9r:A 116 31 0.6739 0.2672 1.0000 2.27e-10 6mcb:B, 6mcc:B, 5vzl:B
22 8ygj:B 136 30 0.6522 0.2206 1.0000 8.16e-10
23 5y36:B 99 30 0.6522 0.3030 1.0000 8.16e-10
24 8wus:B 115 30 0.6522 0.2609 1.0000 8.16e-10
25 7s3h:R 30 30 0.6522 1.0000 1.0000 8.16e-10
26 7s38:R 87 30 0.6522 0.3448 1.0000 8.16e-10
27 7s36:R 87 30 0.6522 0.3448 1.0000 8.16e-10 8t6o:B
28 4oo8:B 97 30 0.6522 0.3093 1.0000 8.16e-10 4oo8:E
29 8kal:E 95 30 0.6522 0.3158 1.0000 8.16e-10
30 8kak:A 94 30 0.6522 0.3191 1.0000 8.16e-10 8kak:E, 8kal:A, 8kam:A
31 8kag:A 98 30 0.6522 0.3061 1.0000 8.16e-10
32 6aeb:A 95 30 0.6522 0.3158 1.0000 8.16e-10 6aeb:E, 6aeg:A
33 8wuv:B 126 29 0.6304 0.2302 1.0000 2.93e-09
34 8wuu:B 111 29 0.6304 0.2613 1.0000 2.93e-09
35 8wut:B 112 29 0.6304 0.2589 1.0000 2.93e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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