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BioLiP Library
>rna
gcccggaugauccucaguggucuggggugcaggcuucaaaccuguagcugucuagcgacagagugguucaauuccaccuu
ucgggcgcca

The query sequence (length=90) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7zjw:F 90 90 1.0000 1.0000 1.0000 9.14e-43
2 8g9z:E 87 89 0.9667 1.0000 0.9775 2.56e-38
3 4rqe:B 84 84 0.9111 0.9762 0.9762 1.54e-35
4 4rqe:D 83 83 0.9000 0.9759 0.9759 5.54e-35
5 7mdl:E 84 89 0.9333 1.0000 0.9438 3.33e-32
6 3hl2:E 82 89 0.9111 1.0000 0.9213 2.60e-28
7 4zdo:E 75 87 0.8333 1.0000 0.8621 9.47e-18
8 4zdp:E 74 87 0.8222 1.0000 0.8506 1.58e-15
9 4rqf:C 63 36 0.4000 0.5714 1.0000 9.54e-13

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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