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BioLiP
>rna
gccaggauguaugcuuagaagcagcaaucauuuaaagagugcguaauagcucacuggu

The query sequence (length=58) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1y39:C 58 58 1.0000 1.0000 1.0000 3.17e-25 1y39:D
2 4wzo:1H 2902 58 0.9483 0.0190 0.9483 3.19e-20
3 4wq1:14 2907 58 0.9483 0.0189 0.9483 3.19e-20 4wr6:14
4 4v9b:DA 2906 58 0.9483 0.0189 0.9483 3.19e-20
5 4v87:DA 2907 58 0.9483 0.0189 0.9483 3.19e-20 4v8b:DA, 4v8d:DA, 4v8e:CA, 4v8f:DA
6 4v6g:DA 2886 58 0.9483 0.0191 0.9483 3.19e-20
7 4v6g:BA 2885 58 0.9483 0.0191 0.9483 3.19e-20
8 6qnq:14 2879 58 0.9483 0.0191 0.9483 3.19e-20
9 6qnq:1H 2879 58 0.9483 0.0191 0.9483 3.19e-20
10 5ndj:14 2909 58 0.9483 0.0189 0.9483 3.19e-20 5ndk:14, 4v6f:AA, 4v8c:BA, 4v9a:DA, 4wqr:14, 4wra:14, 4wsd:14, 4wsm:14, 4wt1:14, 4wu1:14, 4wzd:14
11 6gzq:A1 2912 58 0.9483 0.0189 0.9483 3.19e-20 6gzx:A1, 6gzx:A2, 6gzz:A1, 6gzz:A2, 5ndj:1H, 5ndk:1H, 4v6f:DA, 4v87:AA, 4v8b:BA, 4v8c:AA, 4v8d:BA, 4v8e:AA, 4v8f:AA, 4v9a:BA, 4v9b:BA, 4wq1:1H, 4wqr:1H, 4wr6:1H, 4wra:1H, 4wro:1H, 4wsd:1H, 4wsm:1H, 4wt1:1H, 4wu1:1H, 4wzd:1H
12 6gsl:14 2895 58 0.9483 0.0190 0.9483 3.19e-20
13 6gsl:1H 2895 58 0.9483 0.0190 0.9483 3.19e-20
14 6gsj:1H 2850 58 0.9483 0.0193 0.9483 3.19e-20
15 5e81:1H 2885 58 0.9483 0.0191 0.9483 3.19e-20
16 6tpq:U 2924 57 0.9138 0.0181 0.9298 5.34e-18
17 6tnn:U 2930 57 0.9138 0.0181 0.9298 5.34e-18
18 8s1u:A 2789 57 0.9138 0.0190 0.9298 5.34e-18
19 7qv1:V 2887 57 0.9138 0.0184 0.9298 5.34e-18 7qv3:V
20 7ope:A 2814 57 0.9138 0.0188 0.9298 5.34e-18
21 3j9w:BA 2923 57 0.9138 0.0181 0.9298 5.34e-18 5njt:U, 7qgu:A, 7qh4:A
22 3j3w:A 2685 57 0.9138 0.0197 0.9298 5.34e-18
23 3j3v:A 2884 57 0.9138 0.0184 0.9298 5.34e-18
24 6ha1:A 2887 57 0.9138 0.0184 0.9298 5.34e-18 6ha8:A, 6htq:A, 7o5b:X, 8qpp:X, 7qv2:V, 8r55:X
25 7asa:A 82 57 0.9138 0.6463 0.9298 5.34e-18
26 7as8:A 2812 57 0.9138 0.0188 0.9298 5.34e-18 7as9:A
27 7aqd:A 2918 57 0.9138 0.0182 0.9298 5.34e-18
28 7aqc:A 2820 57 0.9138 0.0188 0.9298 5.34e-18
29 5zlu:V 2875 58 0.9138 0.0184 0.9138 6.91e-17
30 6yef:A 2881 52 0.8448 0.0170 0.9423 6.91e-17
31 8y38:A 2885 52 0.8448 0.0170 0.9423 6.91e-17 8y39:A
32 8y37:A 2884 52 0.8448 0.0170 0.9423 6.91e-17
33 8y36:A 2885 52 0.8448 0.0170 0.9423 6.91e-17
34 4wqf:CA 2848 58 0.9138 0.0186 0.9138 6.91e-17 4wqy:CA
35 4wqf:AA 2852 58 0.9138 0.0186 0.9138 6.91e-17 4wqy:AA
36 4w2e:A 2873 58 0.9138 0.0184 0.9138 6.91e-17
37 4v9n:BA 2789 58 0.9138 0.0190 0.9138 6.91e-17 4v9n:DA
38 5v8i:1A 2862 58 0.9138 0.0185 0.9138 6.91e-17
39 4v8q:AA 2901 58 0.9138 0.0183 0.9138 6.91e-17
40 4v68:BA 2852 58 0.9138 0.0186 0.9138 6.91e-17
41 4v63:BA 2879 58 0.9138 0.0184 0.9138 6.91e-17 4v63:DA, 4v67:BA, 4v67:DA, 4v7p:BA, 4v7p:CA, 4v9j:BA, 4v9j:DA, 4v9k:BA, 4v9k:DA, 4v9l:BA, 4v9l:DA, 4v9m:BA, 4v9m:DA, 4w29:BA, 4w29:DA
42 4v5l:BA 2901 58 0.9138 0.0183 0.9138 6.91e-17 4v5p:BA, 4v5p:DA, 4v5q:BA, 4v5q:DA, 4v5r:BA, 4v5r:DA, 4v5s:BA, 4v5s:DA, 4v8o:BA
43 4v5e:BA 2886 58 0.9138 0.0184 0.9138 6.91e-17 4v5e:DA
44 4v4r:BA 2814 58 0.9138 0.0188 0.9138 6.91e-17 4v4s:BA, 4v4t:BA
45 4v4p:AA 2872 58 0.9138 0.0185 0.9138 6.91e-17
46 4v4i:w 2889 58 0.9138 0.0183 0.9138 6.91e-17 4v4j:w
47 6q95:1 2831 58 0.9138 0.0187 0.9138 6.91e-17
48 8p2f:A 2844 52 0.8448 0.0172 0.9423 6.91e-17 8p2g:A, 8p2h:A
49 6oxa:YA 2875 58 0.9138 0.0184 0.9138 6.91e-17 4w4g:YA, 4ypb:YA, 4yzv:YA, 4zsn:YA
50 6otr:YA 2878 58 0.9138 0.0184 0.9138 6.91e-17 6oxi:YA
51 6otr:RA 2891 58 0.9138 0.0183 0.9138 6.91e-17 6oxa:RA, 6oxi:RA, 4w4g:RA, 4ypb:RA, 4yzv:RA, 4zsn:RA
52 5ot7:4 2901 58 0.9138 0.0183 0.9138 6.91e-17 4v90:BA
53 2om7:I 58 58 0.9138 0.9138 0.9138 6.91e-17
54 7nhm:A 2824 52 0.8448 0.0174 0.9423 6.91e-17
55 7nhl:A 2914 52 0.8448 0.0168 0.9423 6.91e-17
56 5nd8:A 2912 52 0.8448 0.0168 0.9423 6.91e-17
57 6n1d:A23S 2879 58 0.9138 0.0184 0.9138 6.91e-17 6n1d:B23S
58 5li0:A 2914 52 0.8448 0.0168 0.9423 6.91e-17 5nd9:A
59 7lh5:BA 2824 58 0.9138 0.0188 0.9138 6.91e-17 7lh5:DA
60 5j8b:A 2874 58 0.9138 0.0184 0.9138 6.91e-17
61 5hcp:2A 2790 58 0.9138 0.0190 0.9138 6.91e-17 5hcq:2A, 5hcr:2A, 5hd1:2A, 4z8c:2A
62 5hau:2A 2868 58 0.9138 0.0185 0.9138 6.91e-17 4wpo:CA, 4wqu:CA
63 6fxc:AA 2905 52 0.8448 0.0169 0.9423 6.91e-17 6fxc:BA, 5ngm:AA, 6s0x:A, 6s0z:A, 6s12:A, 6s13:A
64 5d8b:VC 2879 58 0.9138 0.0184 0.9138 6.91e-17 5d8b:ZC
65 6cfk:1A 2872 58 0.9138 0.0185 0.9138 6.91e-17 6cfl:1A, 6czr:1A, 5dox:1A, 5f8k:1A, 8fc1:1A, 8fc2:1A, 8fc3:1A, 8fc4:1A, 8fc5:1A, 8fc6:1A, 5fdu:1A, 5fdv:1A, 6fkr:1A, 6fkr:2A, 5hau:1A, 7md7:1A, 7rqa:1A, 7rqb:1A, 7rqc:1A, 7rqd:1A, 7rqe:1A, 8t8b:1A, 8t8c:1A, 8vtw:1A, 8vty:1A, 4wpo:AA, 4wqu:AA, 6xhx:1A, 4y4o:1A
66 6c5l:BA 2901 58 0.9138 0.0183 0.9138 6.91e-17 6c5l:DA, 4v5f:BA, 4v5f:DA, 4v5g:BA, 4v5g:DA, 4v5j:BA, 4v5j:DA, 4v5m:BA, 4v5n:BA, 4v8u:BA, 4v8u:DA
67 6buw:YA 2883 58 0.9138 0.0184 0.9138 6.91e-17 6bz6:YA, 6bz7:YA, 6bz8:YA, 8fom:YA, 8fon:YA, 4l47:YA, 4l71:YA, 4lel:YA, 4lfz:YA, 4lnt:YA, 4lsk:YA, 4lt8:YA, 6nsh:YA, 6nta:YA, 6nuo:YA, 6nwy:YA, 6o3m:YA, 6of6:YA, 6oj2:YA, 6ope:YA, 6osi:YA, 4p6f:YA, 4p70:YA, 5vpo:YA, 5vpp:YA, 1vvj:RA
68 6buw:RA 2882 58 0.9138 0.0184 0.9138 6.91e-17 6bz6:RA, 6bz7:RA, 6bz8:RA, 8fom:RA, 4l47:RA, 4l71:RA, 4lel:RA, 4lfz:RA, 4lnt:RA, 4lsk:RA, 4lt8:RA, 6nwy:RA, 6o3m:RA, 6of6:RA, 6oj2:RA, 6ope:RA, 6osi:RA, 4p6f:RA, 4p70:RA, 4tua:RA, 4tua:YA, 4tub:RA, 4tub:YA, 4tuc:RA, 4tuc:YA, 4tud:RA, 4tud:YA, 4tue:RA, 4tue:YA, 5vpo:RA, 5vpp:RA, 1vvj:YA
69 6b4v:B 2880 58 0.9138 0.0184 0.9138 6.91e-17 6b4v:FB, 6boh:B, 6boh:GB, 6bok:B, 6bok:EB, 5j4d:B, 5j4d:GB
70 5a9z:AA 2889 58 0.9138 0.0183 0.9138 6.91e-17 5aa0:AA, 5imq:D, 5imr:D, 1ml5:a, 4v42:BA, 4v4x:BA, 4v4y:BA, 4v4z:BA
71 4zer:2A 2869 58 0.9138 0.0185 0.9138 2.49e-16
72 4v9h:BA 2859 58 0.9138 0.0185 0.9138 2.49e-16
73 5v8i:2A 2858 58 0.9138 0.0185 0.9138 2.49e-16
74 6ndk:RA 2870 58 0.9138 0.0185 0.9138 2.49e-16 6ndk:YA
75 8fon:RA 2881 58 0.9138 0.0184 0.9138 2.49e-16 6nsh:RA, 6nta:RA, 6nuo:RA
76 6cfk:2A 2867 58 0.9138 0.0185 0.9138 2.49e-16 6cfl:2A, 5czp:YA, 5czp:RA, 6czr:2A, 5dfe:YA, 5dfe:RA, 5dox:2A, 5f8k:2A, 8fc1:2A, 8fc2:2A, 8fc3:2A, 8fc4:2A, 8fc5:2A, 8fc6:2A, 5fdu:2A, 5fdv:2A, 5j30:RA, 5j30:YA, 5j3c:RA, 5j3c:YA, 7md7:2A, 6ord:RA, 6ord:YA, 7rqa:2A, 7rqb:2A, 7rqc:2A, 7rqd:2A, 7rqe:2A, 8t8b:2A, 8t8c:2A, 5uq7:A, 5uq8:A, 8vtw:2A, 8vty:2A, 6xhx:2A, 4y4o:2A
77 9b00:1A 2871 58 0.9138 0.0185 0.9138 2.49e-16 6cae:1A, 6cfj:1A, 8cvj:1A, 8cvk:1A, 8cvl:1A, 5doy:1A, 8ekb:1A, 8ev6:1A, 8ev7:1A, 8g29:1A, 8g2a:1A, 8g2b:1A, 8g2c:1A, 8g2d:1A, 5j4b:1A, 5j4c:1A, 7jql:1A, 7jqm:1A, 6n9e:1A, 6n9f:1A, 6nd5:1A, 6nd6:1A, 6o97:1A, 6of1:1A, 7rq8:1A, 7rq9:1A, 7u2h:1A, 7u2i:1A, 7u2j:1A, 6ucq:1A, 8ud6:1A, 8ud7:1A, 8ud8:1A, 6uo1:1A, 8uvr:1A, 8uvs:1A, 5vp2:1A, 8vtu:1A, 8vtv:1A, 8vtx:1A, 4w2f:BA, 5w4k:1A, 5wis:1A, 5wit:1A, 6xhv:1A, 6xhw:1A, 6xhy:1A, 6xqd:1A, 6xqe:1A, 4y4p:1A, 4z3s:1A
78 4xej:B23S 2876 46 0.7586 0.0153 0.9565 3.22e-15
79 8fn2:A 2762 59 0.9138 0.0192 0.8983 3.22e-15
80 8fmw:AA 2929 59 0.9138 0.0181 0.8983 3.22e-15
81 6ppf:A 2471 30 0.5172 0.0121 1.0000 1.17e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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