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BioLiP
>rna
cgcauaaagaugagacgcguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaagugg
caccgagucggugcuu

The query sequence (length=96) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7s4v:B 98 96 1.0000 0.9796 1.0000 4.58e-46 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
2 7s4u:B 97 96 1.0000 0.9897 1.0000 4.58e-46
3 6o0z:B 96 96 1.0000 1.0000 1.0000 4.58e-46 8t6x:B, 7z4i:A, 7z4l:A
4 6o0x:B 98 96 1.0000 0.9796 1.0000 4.58e-46 6o0y:B
5 8t6t:B 95 95 0.9896 1.0000 1.0000 1.65e-45
6 8ye6:C 92 92 0.9583 1.0000 1.0000 7.66e-44 7z4h:A
7 7z4g:A 91 91 0.9479 1.0000 1.0000 2.76e-43
8 8t6s:B 90 90 0.9375 1.0000 1.0000 9.91e-43 7z4c:A
9 8t6p:B 88 88 0.9167 1.0000 1.0000 1.28e-41 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
10 8ye9:C 90 92 0.9375 1.0000 0.9783 5.97e-40
11 8t78:B 89 84 0.8750 0.9438 1.0000 2.15e-39
12 8t77:B 89 82 0.8542 0.9213 1.0000 2.78e-38 8t79:B
13 8t6y:B 88 82 0.8542 0.9318 1.0000 2.78e-38
14 6ifo:D 90 80 0.8333 0.8889 1.0000 3.59e-37
15 6ifo:C 88 80 0.8333 0.9091 1.0000 3.59e-37 5xbl:B
16 4oo8:B 97 79 0.8229 0.8144 1.0000 1.29e-36 4oo8:E
17 8g1i:B 98 78 0.8125 0.7959 1.0000 4.64e-36
18 8ygj:B 136 77 0.8021 0.5662 1.0000 1.67e-35
19 5y36:B 99 77 0.8021 0.7778 1.0000 1.67e-35
20 8wus:B 115 77 0.8021 0.6696 1.0000 1.67e-35
21 7s38:R 87 77 0.8021 0.8851 1.0000 1.67e-35
22 7s36:R 87 77 0.8021 0.8851 1.0000 1.67e-35 8t6o:B
23 8kal:E 95 77 0.8021 0.8105 1.0000 1.67e-35
24 8kak:A 94 77 0.8021 0.8191 1.0000 1.67e-35 8kak:E, 8kal:A, 8kam:A
25 8kag:A 98 77 0.8021 0.7857 1.0000 1.67e-35
26 6aeb:A 95 77 0.8021 0.8105 1.0000 1.67e-35 6aeb:E, 6aeg:A
27 7z4d:F 77 76 0.7917 0.9870 1.0000 6.01e-35
28 8wuv:B 126 76 0.7917 0.6032 1.0000 6.01e-35
29 8wuu:B 111 76 0.7917 0.6847 1.0000 6.01e-35
30 8wut:B 112 76 0.7917 0.6786 1.0000 6.01e-35
31 7z4d:A 75 74 0.7708 0.9867 1.0000 7.77e-34
32 4zt0:B 72 71 0.7396 0.9861 1.0000 3.62e-32 4zt0:D, 4zt9:B, 4zt9:D
33 7v59:C 115 63 0.6562 0.5478 1.0000 1.01e-27 7v59:G
34 7v59:C 115 30 0.3125 0.2609 1.0000 2.24e-09 7v59:G
35 8fzt:B 69 63 0.6562 0.9130 1.0000 1.01e-27
36 5f9r:A 116 63 0.6562 0.5431 1.0000 1.01e-27 6mcb:B, 6mcc:B, 5vzl:B
37 5f9r:A 116 30 0.3125 0.2586 1.0000 2.24e-09 6mcb:B, 6mcc:B, 5vzl:B
38 6ai6:B 81 63 0.6562 0.7778 1.0000 1.01e-27 5b2r:A, 5b2s:A, 5b2t:A
39 7qr8:A 85 62 0.6458 0.7294 1.0000 3.64e-27
40 7qqw:A 81 62 0.6458 0.7654 1.0000 3.64e-27
41 7qqv:A 85 62 0.6458 0.7294 1.0000 3.64e-27
42 7qqs:A 84 62 0.6458 0.7381 1.0000 3.64e-27 7qqt:A, 7qqu:A, 7qqx:A, 7qqz:A, 7qr5:A
43 8kah:I 63 62 0.6458 0.9841 1.0000 3.64e-27 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J
44 7zo1:A 85 61 0.6354 0.7176 1.0000 1.31e-26
45 5vw1:C 73 61 0.6354 0.8356 1.0000 1.31e-26
46 6vpc:A 81 68 0.6875 0.8148 0.9706 1.31e-26
47 4un4:A 82 61 0.6354 0.7439 1.0000 1.31e-26 4un5:A
48 7qr1:A 83 61 0.6354 0.7349 1.0000 1.31e-26
49 7qr0:A 82 61 0.6354 0.7439 1.0000 1.31e-26
50 7qqq:A 83 61 0.6354 0.7349 1.0000 1.31e-26
51 7qqp:A 84 61 0.6354 0.7262 1.0000 1.31e-26 7qqr:A
52 7oxa:A 81 61 0.6354 0.7531 1.0000 1.31e-26
53 7ox9:A 84 61 0.6354 0.7262 1.0000 1.31e-26 7qqo:A, 7qr7:A
54 7ox8:A 84 61 0.6354 0.7262 1.0000 1.31e-26
55 7ox7:A 81 61 0.6354 0.7531 1.0000 1.31e-26
56 6k4s:A 80 61 0.6354 0.7625 1.0000 1.31e-26 6k4u:A
57 6k4p:A 82 61 0.6354 0.7439 1.0000 1.31e-26
58 5fw1:A 81 61 0.6354 0.7531 1.0000 1.31e-26 5fw2:A, 5fw3:A, 6k3z:A, 6k4q:A, 6k57:A, 4un3:A
59 5fq5:A 83 61 0.6354 0.7349 1.0000 1.31e-26
60 7s37:R 46 31 0.3229 0.6739 1.0000 6.22e-10
61 7s3h:R 30 30 0.3125 1.0000 1.0000 2.24e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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