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BioLiP
>rna
ccguguucuaauugaagguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaaguggc
accgagucggugcuc

The query sequence (length=95) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8kal:E 95 95 1.0000 1.0000 1.0000 1.63e-45
2 8kag:A 98 95 1.0000 0.9694 1.0000 1.63e-45
3 8kak:A 94 94 0.9895 1.0000 1.0000 5.85e-45 8kak:E, 8kal:A, 8kam:A
4 5y36:B 99 78 0.8211 0.7879 1.0000 4.58e-36
5 8wus:B 115 78 0.8211 0.6783 1.0000 4.58e-36
6 7z4g:A 91 77 0.8105 0.8462 1.0000 1.65e-35
7 8ygj:B 136 77 0.8105 0.5662 1.0000 1.65e-35
8 8ye6:C 92 77 0.8105 0.8370 1.0000 1.65e-35 7z4h:A
9 8t78:B 89 77 0.8105 0.8652 1.0000 1.65e-35
10 8t77:B 89 77 0.8105 0.8652 1.0000 1.65e-35 8t79:B
11 8t6y:B 88 77 0.8105 0.8750 1.0000 1.65e-35
12 8t6t:B 95 77 0.8105 0.8105 1.0000 1.65e-35
13 8t6s:B 90 77 0.8105 0.8556 1.0000 1.65e-35 7z4c:A
14 8t6p:B 88 77 0.8105 0.8750 1.0000 1.65e-35 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
15 7s4v:B 98 77 0.8105 0.7857 1.0000 1.65e-35 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
16 7s4u:B 97 77 0.8105 0.7938 1.0000 1.65e-35
17 7s38:R 87 77 0.8105 0.8851 1.0000 1.65e-35
18 7s36:R 87 77 0.8105 0.8851 1.0000 1.65e-35 8t6o:B
19 4oo8:B 97 77 0.8105 0.7938 1.0000 1.65e-35 4oo8:E
20 6o0z:B 96 77 0.8105 0.8021 1.0000 1.65e-35 8t6x:B, 7z4i:A, 7z4l:A
21 6o0x:B 98 77 0.8105 0.7857 1.0000 1.65e-35 6o0y:B
22 6ifo:D 90 77 0.8105 0.8556 1.0000 1.65e-35
23 6ifo:C 88 77 0.8105 0.8750 1.0000 1.65e-35 5xbl:B
24 8g1i:B 98 77 0.8105 0.7857 1.0000 1.65e-35
25 6aeb:A 95 80 0.8316 0.8316 0.9875 1.65e-35 6aeb:E, 6aeg:A
26 8wuv:B 126 76 0.8000 0.6032 1.0000 5.93e-35
27 8wuu:B 111 76 0.8000 0.6847 1.0000 5.93e-35
28 8wut:B 112 76 0.8000 0.6786 1.0000 5.93e-35
29 8ye9:C 90 77 0.7895 0.8333 0.9740 1.28e-31
30 7v59:C 115 62 0.6526 0.5391 1.0000 3.59e-27 7v59:G
31 8fzt:B 69 62 0.6526 0.8986 1.0000 3.59e-27
32 5f9r:A 116 62 0.6526 0.5345 1.0000 3.59e-27 6mcb:B, 6mcc:B, 5vzl:B
33 4zt0:B 72 61 0.6421 0.8472 1.0000 1.29e-26 4zt0:D, 4zt9:B, 4zt9:D
34 7zo1:A 85 61 0.6421 0.7176 1.0000 1.29e-26
35 7z4d:F 77 61 0.6421 0.7922 1.0000 1.29e-26
36 7z4d:A 75 61 0.6421 0.8133 1.0000 1.29e-26
37 5vw1:C 73 64 0.6632 0.8630 0.9844 1.29e-26
38 6vpc:A 81 61 0.6421 0.7531 1.0000 1.29e-26
39 4un4:A 82 64 0.6632 0.7683 0.9844 1.29e-26 4un5:A
40 7qr8:A 85 61 0.6421 0.7176 1.0000 1.29e-26
41 7qr1:A 83 61 0.6421 0.7349 1.0000 1.29e-26
42 7qr0:A 82 61 0.6421 0.7439 1.0000 1.29e-26
43 7qqw:A 81 61 0.6421 0.7531 1.0000 1.29e-26
44 7qqv:A 85 61 0.6421 0.7176 1.0000 1.29e-26
45 7qqs:A 84 61 0.6421 0.7262 1.0000 1.29e-26 7qqt:A, 7qqu:A, 7qqx:A, 7qqz:A, 7qr5:A
46 7qqq:A 83 61 0.6421 0.7349 1.0000 1.29e-26
47 7qqp:A 84 61 0.6421 0.7262 1.0000 1.29e-26 7qqr:A
48 7oxa:A 81 61 0.6421 0.7531 1.0000 1.29e-26
49 7ox9:A 84 61 0.6421 0.7262 1.0000 1.29e-26 7qqo:A, 7qr7:A
50 7ox8:A 84 61 0.6421 0.7262 1.0000 1.29e-26
51 7ox7:A 81 61 0.6421 0.7531 1.0000 1.29e-26
52 8kah:I 63 61 0.6421 0.9683 1.0000 1.29e-26 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J
53 6k4s:A 80 64 0.6632 0.7875 0.9844 1.29e-26 6k4u:A
54 6k4p:A 82 64 0.6632 0.7683 0.9844 1.29e-26
55 5fw1:A 81 64 0.6632 0.7778 0.9844 1.29e-26 5fw2:A, 5fw3:A, 6k3z:A, 6k4q:A, 6k57:A, 4un3:A
56 5fq5:A 83 64 0.6632 0.7590 0.9844 1.29e-26
57 6ai6:B 81 61 0.6421 0.7531 1.0000 1.29e-26 5b2r:A, 5b2s:A, 5b2t:A
58 7s3h:R 30 30 0.3158 1.0000 1.0000 2.21e-09
59 7s37:R 46 30 0.3158 0.6522 1.0000 2.21e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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