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BioLiP
>rna
ccccuucgucuagaggcccaggacaccgcccuuucacggcgguaacagggguucgaauccccuaggggac

The query sequence (length=70) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8hsp:V 76 70 1.0000 0.9211 1.0000 8.61e-32 8htz:V, 8hu1:V
2 5hr7:D 70 70 1.0000 1.0000 1.0000 8.61e-32 5hr7:C
3 2der:D 71 70 1.0000 0.9859 1.0000 8.61e-32
4 2der:C 74 70 1.0000 0.9459 1.0000 8.61e-32 2deu:C, 2deu:D
5 5hr6:C 68 68 0.9714 1.0000 1.0000 1.11e-30
6 2det:C 70 68 0.9714 0.9714 1.0000 1.11e-30
7 5hr6:D 66 66 0.9429 1.0000 1.0000 1.44e-29

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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