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BioLiP
>rna
auuuggucaauuugaauacagagaucagcaguuccccugcauaaggaugaaccguu

The query sequence (length=56) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gap:W 56 56 1.0000 1.0000 1.0000 3.90e-24
2 5gan:W 80 56 1.0000 0.7000 1.0000 3.90e-24
3 5nrl:6 95 60 1.0000 0.5895 0.9333 1.41e-18
4 5zwm:F 99 59 0.9643 0.5455 0.9153 8.50e-16 5zwo:F
5 3jcm:D 45 41 0.7321 0.9111 1.0000 8.50e-16
6 5y88:D 101 63 1.0000 0.5545 0.8889 3.95e-14
7 5mps:6 99 63 1.0000 0.5657 0.8889 3.95e-14 5mq0:6
8 5lj3:V 97 63 1.0000 0.5773 0.8889 3.95e-14 5lj5:V
9 7dco:F 103 63 1.0000 0.5437 0.8889 3.95e-14 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6n:E, 6j6q:E, 5wsg:E, 5ylz:D
10 7b9v:6 102 63 1.0000 0.5490 0.8889 3.95e-14 6bk8:6, 6exn:6, 5lqw:6
11 5tf6:B 71 59 0.9286 0.7324 0.8814 6.61e-12

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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