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BioLiP
>rna
agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuugcuaauugaaaacuucccaaua

The query sequence (length=76) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8qxd:4 124 76 1.0000 0.6129 1.0000 4.45e-35 8r08:4, 8r0a:4
2 8qp8:4 76 76 1.0000 1.0000 1.0000 4.45e-35 8qp9:4, 8qpk:4
3 8h6e:4A 125 76 1.0000 0.6080 1.0000 4.45e-35
4 6qw6:4 125 76 0.9868 0.6000 0.9868 2.07e-33 6qx9:4
5 8h6j:4A 125 77 1.0000 0.6080 0.9870 2.07e-33
6 8r09:4 128 80 1.0000 0.5938 0.9500 1.61e-29 8r0b:4
7 8qoz:4 80 80 1.0000 0.9500 0.9500 1.61e-29 8qpb:4
8 8qpe:4 63 63 0.8026 0.9683 0.9683 5.83e-24
9 8h6k:4A 128 63 0.8026 0.4766 0.9683 5.83e-24 8h6l:4A
10 6ahd:I 136 63 0.8026 0.4485 0.9683 5.83e-24 8qzs:4
11 8rm5:4 110 62 0.7895 0.5455 0.9677 2.10e-23
12 8qpa:4 62 62 0.7895 0.9677 0.9677 2.10e-23
13 8qo9:4 127 62 0.7895 0.4724 0.9677 2.10e-23
14 5o9z:4 137 63 0.7895 0.4380 0.9524 2.71e-22
15 8q7n:4 76 62 0.7763 0.7763 0.9516 9.76e-22
16 6ah0:I 117 62 0.7763 0.5043 0.9516 3.51e-21

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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