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BioLiP
>rna
aaggguuccuguccaacguuaaucggggcaggguga

The query sequence (length=36) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ztm:BA 2901 36 1.0000 0.0124 1.0000 2.56e-13
2 6ztl:BA 2899 36 1.0000 0.0124 1.0000 2.56e-13 6ztn:BA
3 6ztj:BA 2900 36 1.0000 0.0124 1.0000 2.56e-13 6zto:BA, 6ztp:BA, 6zu1:BA
4 7zq5:b 2900 36 1.0000 0.0124 1.0000 2.56e-13
5 7zod:b 2901 36 1.0000 0.0124 1.0000 2.56e-13 7zp8:b, 7zq6:b
6 7z20:b 2901 36 1.0000 0.0124 1.0000 2.56e-13
7 7yla:I 2876 36 1.0000 0.0125 1.0000 2.56e-13
8 6y69:A 2887 36 1.0000 0.0125 1.0000 2.56e-13
9 6wnw:4 3031 36 1.0000 0.0119 1.0000 2.56e-13
10 6wnt:4 3025 36 1.0000 0.0119 1.0000 2.56e-13 6wnv:4
11 5wdt:A 2900 36 1.0000 0.0124 1.0000 2.56e-13 5we4:A, 5we6:A, 5wf0:A, 5wfk:A, 5wfs:A
12 6vwl:2 2833 36 1.0000 0.0127 1.0000 2.56e-13 6vwm:2, 6vwn:2
13 4v9d:DA 2896 36 1.0000 0.0124 1.0000 2.56e-13
14 4v85:BA 2853 36 1.0000 0.0126 1.0000 2.56e-13 4v89:BA
15 4v7c:BA 2897 36 1.0000 0.0124 1.0000 2.56e-13 4v7d:AA
16 4v4v:B0 2740 36 1.0000 0.0131 1.0000 2.56e-13 4v4w:B0
17 8upo:a 2880 36 1.0000 0.0125 1.0000 2.56e-13 8upr:a, 8uql:a, 8uqm:a, 8uqp:a, 8ur0:a, 8urh:a, 8uri:a, 8urx:a, 8ury:a, 6vu3:a, 6vyq:a, 6vyr:a, 6vys:a, 6vyt:a, 6vyu:a, 6vyw:a, 6vyx:a, 6vyy:a, 6vyz:a, 6vz2:a, 6vz3:a, 6vz5:a, 6vz7:a, 6vzj:a, 6x6t:a, 6x7f:a, 6x7k:a, 6x9q:a, 6xdq:a, 6xdr:a, 6xgf:a, 6xii:a, 6xij:a
18 7uph:I 4438 36 1.0000 0.0081 1.0000 2.56e-13
19 5u9f:01 2903 36 1.0000 0.0124 1.0000 2.56e-13 5u9g:01
20 8r8m:a 2738 36 1.0000 0.0131 1.0000 2.56e-13
21 6qul:A 2795 36 1.0000 0.0129 1.0000 2.56e-13
22 6qdw:b 2888 36 1.0000 0.0125 1.0000 2.56e-13 6ys3:b
23 8qbt:A 2841 36 1.0000 0.0127 1.0000 2.56e-13
24 8q4f:a 2732 36 1.0000 0.0132 1.0000 2.56e-13
25 8pkl:7 2904 36 1.0000 0.0124 1.0000 2.56e-13 8r3v:72, 8rcl:72, 8rcm:72, 8rcs:72, 8rct:72
26 7pjt:A 2902 36 1.0000 0.0124 1.0000 2.56e-13
27 8phj:a 2862 36 1.0000 0.0126 1.0000 2.56e-13
28 7otc:A 2903 36 1.0000 0.0124 1.0000 2.56e-13
29 7oj0:a 2807 36 1.0000 0.0128 1.0000 2.56e-13
30 7ode:I 1990 36 1.0000 0.0181 1.0000 2.56e-13
31 5np6:Y 2903 36 1.0000 0.0124 1.0000 2.56e-13 7pjs:A, 7pju:A, 7pjv:A, 7pjw:A, 7pjx:A, 7pjy:A, 7pjz:A
32 7nbu:a 2900 36 1.0000 0.0124 1.0000 2.56e-13
33 7n30:23 2901 36 1.0000 0.0124 1.0000 2.56e-13
34 7n2v:23 2904 36 1.0000 0.0124 1.0000 2.56e-13 7n31:23, 4v6k:AB, 4v6l:BB, 4v6m:B8, 4v6n:AB, 4v6o:BB, 4v6p:BB, 4v6q:BB, 4v6r:BB, 4v6s:AB, 4v6v:BA
35 7n2u:23 2902 36 1.0000 0.0124 1.0000 2.56e-13
36 7n1p:23 2904 36 1.0000 0.0124 1.0000 2.56e-13
37 5lza:A 2900 36 1.0000 0.0124 1.0000 2.56e-13 5lze:A, 5lzf:A
38 6lkq:t 2850 36 1.0000 0.0126 1.0000 2.56e-13
39 5l3p:A 2890 36 1.0000 0.0125 1.0000 2.56e-13
40 5kcs:1A 2900 36 1.0000 0.0124 1.0000 2.56e-13
41 5kcr:1A 2897 36 1.0000 0.0124 1.0000 2.56e-13
42 3ja1:LA 2904 36 1.0000 0.0124 1.0000 2.56e-13
43 3j9z:LA 2904 36 1.0000 0.0124 1.0000 2.56e-13
44 3j8g:B 2874 36 1.0000 0.0125 1.0000 2.56e-13
45 3j5l:A 2853 36 1.0000 0.0126 1.0000 2.56e-13
46 3j45:2 36 36 1.0000 1.0000 1.0000 2.56e-13 3j46:2
47 8j1z:a 2513 36 1.0000 0.0143 1.0000 2.56e-13
48 6hrm:1 4450 36 1.0000 0.0081 1.0000 2.56e-13
49 6h4n:A 2900 36 1.0000 0.0124 1.0000 2.56e-13 6h58:A, 6h58:AA, 5mgp:A
50 6gxn:A 2895 36 1.0000 0.0124 1.0000 2.56e-13
51 6gwt:A 2896 36 1.0000 0.0124 1.0000 2.56e-13 6gxm:A, 6gxp:A
52 6gc7:A 1901 36 1.0000 0.0189 1.0000 2.56e-13
53 6gc6:A 2092 36 1.0000 0.0172 1.0000 2.56e-13
54 6gc4:A 2586 36 1.0000 0.0139 1.0000 2.56e-13
55 6gc0:A 2729 36 1.0000 0.0132 1.0000 2.56e-13
56 6gbz:A 2789 36 1.0000 0.0129 1.0000 2.56e-13
57 5gae:A 2884 36 1.0000 0.0125 1.0000 2.56e-13
58 5gad:A 2883 36 1.0000 0.0125 1.0000 2.56e-13 5gaf:A, 5gag:A, 5gah:A, 5nco:A, 6s0k:A
59 8fzd:A 2899 36 1.0000 0.0124 1.0000 2.56e-13 8fze:A, 8fzf:A, 8fzg:A, 8fzh:A, 8fzi:A, 8fzj:A, 8g7p:A, 8g7q:A, 8g7r:A, 8g7s:A, 8p16:1, 8p17:1, 8p18:1, 8qk7:1
60 8fto:a 2767 36 1.0000 0.0130 1.0000 2.56e-13
61 6enj:A 2871 36 1.0000 0.0125 1.0000 2.56e-13 6enu:A
62 6enf:A 2807 36 1.0000 0.0128 1.0000 2.56e-13
63 8ekc:A 2845 36 1.0000 0.0127 1.0000 2.56e-13 8syl:A
64 8eiu:a 2753 36 1.0000 0.0131 1.0000 2.56e-13
65 8e33:I 2897 36 1.0000 0.0124 1.0000 2.56e-13 8e36:I, 8e3l:I, 8e3o:I, 8e43:I, 8e45:I, 8e46:I, 6pc5:I, 6pc6:I, 6pc7:I, 6pc8:I, 6pch:I, 6pcq:I, 6pcr:I, 6pcs:I, 6pct:I, 6wyv:I
66 6dnc:B 2903 36 1.0000 0.0124 1.0000 2.56e-13 5kps:28, 5kpv:27, 5kpw:27, 5kpx:27, 6ysr:A, 6yss:A, 6yst:A, 6ysu:A
67 9cl9:CA 1543 36 1.0000 0.0233 1.0000 2.56e-13
68 8cgv:a 2687 36 1.0000 0.0134 1.0000 2.56e-13
69 8cgk:a 2699 36 1.0000 0.0133 1.0000 2.56e-13
70 8cgd:a 2748 36 1.0000 0.0131 1.0000 2.56e-13
71 8cam:a 2690 36 1.0000 0.0134 1.0000 2.56e-13
72 8c97:A 1292 36 1.0000 0.0279 1.0000 2.56e-13
73 8c93:A 1740 36 1.0000 0.0207 1.0000 2.56e-13
74 8c92:A 1873 36 1.0000 0.0192 1.0000 2.56e-13
75 8c91:A 2077 36 1.0000 0.0173 1.0000 2.56e-13
76 8c90:A 2100 36 1.0000 0.0171 1.0000 2.56e-13
77 8c8z:A 2205 36 1.0000 0.0163 1.0000 2.56e-13
78 8c8y:A 2548 36 1.0000 0.0141 1.0000 2.56e-13
79 8c8x:A 2705 36 1.0000 0.0133 1.0000 2.56e-13
80 6by1:DA 2869 36 1.0000 0.0125 1.0000 2.56e-13
81 6by1:CA 2867 36 1.0000 0.0126 1.0000 2.56e-13
82 7bv8:A 2897 36 1.0000 0.0124 1.0000 2.56e-13 5h5u:A
83 6bu8:01 2903 36 1.0000 0.0124 1.0000 2.56e-13 7jss:1, 7jsw:1, 7jsz:1, 7jt1:1, 7jt2:1, 7jt3:1, 7k50:1, 7k51:1, 7k52:1, 7k53:1, 7k54:1, 7k55:1, 7lv0:1, 6ofx:1, 6og7:1, 6ogf:1, 6ogg:1, 6ogi:1, 7ss9:1, 7ssd:1, 7ssl:1, 7ssn:1, 7sso:1, 7ssw:1, 7st2:1, 7st6:1, 7st7:1, 7tos:23S, 5uyk:01, 5uyl:01, 5uym:01, 5uyn:01, 5uyp:01, 5uyq:01, 8vs9:23S, 8vsa:23S, 6wd0:1, 6wd1:1, 6wd2:1, 6wd3:1, 6wd4:1, 6wd5:1, 6wd6:1, 6wd7:1, 6wd8:1, 6wd9:1, 6wda:1, 6wdb:1, 6wdc:1, 6wdd:1, 6wde:1, 6wdf:1, 6wdg:1, 6wdh:1, 6wdi:1, 6wdj:1, 6wdk:1, 6wdl:1, 6wdm:1
84 7bl5:A 2913 36 1.0000 0.0124 1.0000 2.56e-13
85 7bl2:A 2902 36 1.0000 0.0124 1.0000 2.56e-13 7bl3:A
86 8bf7:0 2758 36 1.0000 0.0131 1.0000 2.56e-13 8bge:0, 8bgh:0, 8bh4:0, 8bhj:0, 8bhl:0, 8bhn:0, 8bhp:0, 8bil:0, 8bim:0
87 3bbx:B 2902 36 1.0000 0.0124 1.0000 2.56e-13
88 8b7y:I 2898 36 1.0000 0.0124 1.0000 2.56e-13 8e30:I, 8e32:I, 8e35:I, 8e3m:I, 8e41:I, 8e42:I, 8e44:I, 8e47:I, 8e48:I, 8e49:I, 6i7v:CA, 5it8:CA, 5j5b:CA, 5j7l:CA, 5j88:CA, 5j8a:CA, 5j91:CA, 5jc9:CA, 7lvk:I, 6pj6:I, 7qq3:I, 7s1g:I, 7s1h:I, 7s1i:I, 7s1j:I, 7s1k:I, 6u48:CA, 4ybb:CA
89 7b5k:A 2897 36 1.0000 0.0124 1.0000 2.56e-13 7bl4:A, 7bl6:A, 8fiz:BA, 6gc8:A, 6i7v:DA, 5it8:DA, 5j5b:DA, 5j7l:DA, 5j88:DA, 5j8a:DA, 5j91:DA, 3jcn:A, 5jc9:DA, 5jte:BA, 5ju8:BA, 5nwy:N, 7o19:BA, 7o1a:BA, 7o1c:BA, 7q4k:BA, 7qg8:N, 7qgh:N, 7qgn:N, 7qgr:N, 6tbv:23S1, 6tc3:23S1, 4u1u:BA, 4u1u:DA, 4u1v:BA, 4u1v:DA, 4u20:BA, 4u20:DA, 4u24:BA, 4u24:DA, 4u25:BA, 4u25:DA, 4u26:BA, 4u26:DA, 4u27:BA, 4u27:DA, 4v9c:BA, 4v9c:DA, 4v9d:CA, 4wf1:BA, 4wf1:DA, 4woi:BA, 4woi:CA, 6xz7:A, 6xza:A2, 6xzb:A2, 4ybb:DA
90 8b0x:a 2748 36 1.0000 0.0131 1.0000 2.56e-13
91 9ax8:A 2854 36 1.0000 0.0126 1.0000 2.56e-13 6i0y:A, 3j7z:A, 3jcj:A, 6o9k:A, 4uy8:A, 4v6c:BA, 4v6d:BA, 4v6e:BA, 4v7b:BA, 4v7s:BA, 4v7t:BA, 4v7u:BA, 4v7v:BA, 4v9o:AA, 4v9o:CA, 4v9o:EA, 4v9o:GA, 4v9p:AA, 4v9p:CA, 4v9p:EA, 4v9p:GA, 4www:RA
92 9ax7:a 2753 36 1.0000 0.0131 1.0000 2.56e-13 8aye:a, 8ceu:a, 9cg5:a, 9cg6:a, 9cg7:a, 8emm:a, 9fbv:a, 8g6w:a, 8g6x:a, 8g6y:a, 8hsp:a, 8htz:a, 8hu1:a, 8ifb:a, 8ifc:a, 7k00:a, 7oiz:a, 7p3k:a, 8pva:a, 8r6c:a, 7y7c:a, 7y7d:a, 7y7e:a, 7y7f:a, 7y7g:a, 7y7h:a
93 8ap4:a 2750 36 1.0000 0.0131 1.0000 2.56e-13
94 8ana:a 2733 36 1.0000 0.0132 1.0000 2.56e-13
95 8akn:a 2753 36 1.0000 0.0131 1.0000 2.56e-13 8am9:a, 8qoa:a
96 5aka:B 2841 36 1.0000 0.0127 1.0000 2.56e-13 2j28:B, 6o9j:B, 4v4h:BB, 4v4h:DB, 4v4q:BB, 4v4q:DB, 4v50:BB, 4v50:DB, 4v52:BB, 4v52:DB, 4v53:BB, 4v53:DB, 4v54:BB, 4v54:DB, 4v55:BB, 4v55:DB, 4v56:BB, 4v56:DB, 4v57:BB, 4v57:DB, 4v5b:AB, 4v5b:CB, 4v5y:BB, 4v5y:DB, 4v64:BB, 4v64:DB, 4v6c:DA, 4v6d:DA, 4v6e:DA, 4v7s:DA, 4v7t:DA, 4v7u:DA, 4v7v:DA, 4www:YA
97 5afi:A 2900 36 1.0000 0.0124 1.0000 2.56e-13 7cpj:A, 6gxo:A, 3j9y:A, 5o2r:A, 8rpy:A, 8rpz:A, 8rq0:A, 8rq2:A
98 5ady:B 2903 36 1.0000 0.0124 1.0000 2.56e-13 4csu:B, 7d6z:A, 7d80:A, 8g2u:B, 8g31:B, 8g34:B, 8g38:B, 3jbu:b, 3jbv:b, 3jcd:A, 3jce:A, 5lzb:A, 5lzc:A, 5lzd:A, 7n2c:23, 7nso:A, 7nsp:A, 7nsq:A, 8peg:7, 6szs:A, 8t5d:B, 8t5h:B, 7ug7:23, 4v5h:BB, 4v65:BB, 4v66:BB, 4v69:BB, 4v6t:BA, 4v6y:BA, 4v6z:BA, 4v70:BA, 4v71:BA, 4v72:BA, 4v73:BA, 4v74:BA, 4v75:BA, 4v76:BA, 4v77:BA, 4v78:BA, 4v79:BA, 4v7a:BA, 4v7i:A8, 7zta:23S1
99 7ac7:1 2903 36 1.0000 0.0124 1.0000 2.56e-13 7acj:1, 7acr:1, 7m5d:1, 5mdv:1, 5mdw:1, 5mdy:1, 5mdz:1, 7nwt:1, 7nww:1, 7oif:1, 7oig:1, 7oii:1, 6om6:1, 6ore:1, 6orl:1, 6osk:1, 6osq:1, 6ost:1, 6ot3:1, 7ot5:1, 6ouo:1, 6q97:1, 6q98:1, 6q9a:1, 7sa4:1
100 7abz:1 2904 36 1.0000 0.0124 1.0000 2.56e-13 6c4i:A, 5iqr:1, 5u4i:A, 8w51:A
101 8a3l:a 2903 36 1.0000 0.0124 1.0000 2.56e-13
102 8c9a:A 650 31 0.8611 0.0477 1.0000 1.54e-10
103 8c98:A 1018 31 0.8611 0.0305 1.0000 1.54e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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