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BioLiP
>protein
CCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVQGAAAHCASVGDIVIIASFVTMPDEEARTWRPN
VAYFEGDNEMKRTAK

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4cry:G 102 94 0.9684 0.9020 0.9787 1.26e-64 7a8y:BBB, 7a8y:EaE, 4aok:B, 4aok:E, 4aon:B, 4aon:E, 1aw8:B, 1aw8:E, 4d7z:B, 5ls7:D, 1pyu:B, 1pyu:D, 6rxh:B, 6rxh:E, 3tm7:B, 3tm7:D
2 1vc3:B 96 95 0.4526 0.4479 0.4526 3.27e-28 2eeo:B
3 6p1y:B 102 89 0.4211 0.3922 0.4494 2.30e-25 6oyy:B, 6oyy:D, 6oyy:J, 6oyy:L, 6oyy:F, 6oyy:H, 6oz8:B, 6oz8:D, 6oz8:J, 6oz8:L, 6oz8:F, 6oz8:H, 6p02:B, 6p02:D, 6p02:F, 6p02:H, 6p02:J, 6p02:L, 6p02:N, 6p02:P, 6p02:R, 6p02:T, 6p02:V, 6p02:X
4 3plx:B 101 88 0.4105 0.3861 0.4432 7.09e-22
5 1uhe:A 97 88 0.3474 0.3402 0.3750 1.25e-14 1uhd:A
6 5e4r:A 466 37 0.1895 0.0386 0.4865 0.51 4xdz:A, 4xdz:B
7 5e4r:A 466 37 0.1895 0.0386 0.4865 0.51 4xdz:A, 4xdz:B
8 5juy:B 1234 60 0.2105 0.0162 0.3333 1.5 1cy5:A, 3j2t:A, 3j2t:B, 3j2t:C, 3j2t:D, 3j2t:E, 3j2t:F, 3j2t:G, 3jbt:A, 3jbt:C, 3jbt:E, 3jbt:G, 3jbt:I, 3jbt:K, 3jbt:M, 5juy:A, 5juy:C, 5juy:D, 5juy:E, 5juy:F, 5juy:G, 2p1h:A, 5wve:A, 5wve:C, 5wve:E, 5wve:G, 5wve:I, 5wve:K, 5wve:M, 1z6t:A, 1z6t:B, 1z6t:C, 1z6t:D
9 6pmi:F 239 38 0.1368 0.0544 0.3421 1.7 6pmj:F
10 7naf:B 190 60 0.2000 0.1000 0.3167 3.3
11 1lgr:A 445 20 0.0947 0.0202 0.4500 4.5 1lgr:B, 1lgr:C, 1lgr:D, 1lgr:E, 1lgr:F, 1lgr:G, 1lgr:H, 1lgr:I, 1lgr:J, 1lgr:K, 1lgr:L, 2lgs:A, 2lgs:B, 2lgs:C, 2lgs:D, 2lgs:E, 2lgs:F, 2lgs:G, 2lgs:H, 2lgs:I, 2lgs:J, 2lgs:K, 2lgs:L
12 1f1h:A 468 20 0.0947 0.0192 0.4500 4.5 1f1h:B, 1f1h:C, 1f1h:D, 1f1h:E, 1f1h:F, 1f1h:G, 1f1h:H, 1f1h:I, 1f1h:J, 1f1h:K, 1f1h:L, 1f52:A, 1f52:B, 1f52:C, 1f52:D, 1f52:E, 1f52:F, 1f52:G, 1f52:H, 1f52:I, 1f52:J, 1f52:K, 1f52:L, 1fpy:A, 1fpy:B, 1fpy:C, 1fpy:D, 1fpy:E, 1fpy:F, 1fpy:G, 1fpy:H, 1fpy:I, 1fpy:J, 1fpy:K, 1fpy:L, 2gls:A, 2gls:B, 2gls:C, 2gls:D, 2gls:E, 2gls:F, 2gls:G, 2gls:H, 2gls:I, 2gls:J, 2gls:K, 2gls:L
13 5yeq:B 329 15 0.1053 0.0304 0.6667 4.5
14 6tbu:A 842 50 0.1684 0.0190 0.3200 4.7
15 4x1x:A 332 79 0.2211 0.0633 0.2658 8.0 4x1z:A, 4x1z:B
16 2x4h:C 131 39 0.1263 0.0916 0.3077 9.0 2x4h:A, 2x4h:B, 2x4h:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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