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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YVLTETSAGYALLKASVLKEFKIAAFSKFNSAANALEEANSIIEGKVSSQLEKLLEEIKKDKKSTLIVSETKLANAINKL
GLNFNVVSDAVTLDIYRAIKEYLPELLPGMSDNDLSKMSLGLAHSIGRHKLKFSADKVDVMIIQAIALLDDLDKELNTYA
MRCKEWYGWHFPELAKIVTDSVAYARIILTMGIRSKASETDLSEILPEEIEERVKTAAEVSMGTEITQTDLDNINALAEQ
IVEFAAYREQLSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGL
LYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRLSQLEG

The query sequence (length=382) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aju:CE 436 401 1.0000 0.8761 0.9526 0.0 7ajt:CE, 7d4i:3E, 7d5s:3E, 7d5t:3E, 7d63:3E, 6ke6:3E, 6lqp:3E, 6lqq:3E, 6lqr:3E, 6lqs:3E, 6lqt:3E, 6lqu:3E, 6lqv:3E, 7suk:SB, 5wyj:3E, 5wyk:3E, 6zqa:CE, 6zqb:CE, 6zqc:CE, 6zqd:CE, 6zqe:CE
2 6nd4:b 425 272 0.6990 0.6282 0.9816 0.0 5wlc:SB
3 6rxt:CD 420 388 0.6204 0.5643 0.6108 1.69e-169 5oql:U, 6rxu:CD, 6rxv:CD, 6rxx:CD, 6rxy:CD, 6rxz:CD
4 7mq8:SB 440 400 0.5497 0.4773 0.5250 2.54e-140 7mq9:SB, 7mqa:SB
5 7mq8:SA 396 408 0.4267 0.4116 0.3995 4.31e-91 7mq9:SA, 7mqa:SA
6 7ajt:CD 380 411 0.4084 0.4105 0.3796 3.58e-81 7aju:CD, 7d4i:3D, 7d5s:3D, 7d5t:3D, 7d63:3D, 6ke6:3D, 6lqp:3D, 6lqq:3D, 6lqr:3D, 6lqs:3D, 6lqt:3D, 6lqu:3D, 6lqv:3D, 6nd4:a, 7suk:SA, 5wlc:SA, 5wyj:3D, 5wyk:3D, 6zqa:CD, 6zqb:CD, 6zqc:CD, 6zqd:CD
7 5oql:T 387 372 0.3508 0.3463 0.3602 4.32e-61 6rxt:CC, 6rxu:CC, 6rxv:CC, 6rxy:CC, 6rxz:CC
8 4by9:F 366 318 0.2827 0.2951 0.3396 4.80e-53 4by9:I, 4by9:C, 4by9:L, 3nmu:A, 3nmu:B, 3nvi:A, 3nvi:C, 3nvk:A, 3nvk:F
9 5gin:A 375 211 0.2330 0.2373 0.4218 4.72e-50 5gin:B, 5gin:K, 5gio:A, 5gio:B, 5gio:K, 5gip:A, 5gip:B, 5gip:K, 5gip:L, 3id5:A, 3id5:E, 5jpq:S, 5jpq:T, 3pla:A, 3pla:B, 3pla:K, 7xpl:A, 7xpl:B
10 5o9z:H 413 244 0.1675 0.1550 0.2623 1.24e-22 6ahd:L, 8h6e:4D, 8h6k:4D, 8h6l:4D, 2ozb:B, 2ozb:E, 8q7n:L, 8qo9:L, 8qoz:L, 8qp8:L, 8qp9:L, 8qpa:L, 8qpb:L, 8qpe:L, 8qpk:L, 6qw6:4C, 6qx9:4C, 8qxd:L, 8qzs:L, 8r08:L, 8r09:L, 8r0b:L, 8rm5:L, 3siu:B, 3siu:E, 3siv:B, 3siv:E, 3siv:H, 3siv:K, 8y6o:L
11 8r0a:L 292 244 0.1597 0.2089 0.2500 9.44e-18 6ah0:L
12 3jcm:I 416 210 0.1335 0.1226 0.2429 4.08e-12 5gan:F, 5gap:F, 5nrl:F, 5zwm:L, 5zwo:L
13 6h7f:A 671 152 0.0969 0.0551 0.2434 0.73 6h7f:B, 6h7f:C, 6h7v:B, 6hcp:A, 6hcp:B, 6hcp:C
14 4pso:I 221 78 0.0628 0.1086 0.3077 0.96 4pso:A, 4pso:B, 4pso:C, 4pso:D, 4pso:F, 4pso:G, 4pso:H
15 4wc2:A 367 113 0.0707 0.0736 0.2389 2.2 1vfg:A, 1vfg:B, 4wc0:A, 4wc0:B, 4wc1:A, 4wc1:B, 4wc3:A, 4wc4:A, 4wc5:A, 4wc6:A, 4wc7:A, 4x0a:A, 4x0b:A
16 3cvv:A 519 60 0.0497 0.0366 0.3167 3.8 7ayv:A, 7azt:A, 8c1u:A, 8c69:A, 8c6a:A, 8c6b:A, 8c6c:A, 8c6f:A, 8c6h:A, 3cvu:A, 3cvw:A, 3cvx:A, 3cvy:A, 7qut:A, 2wb2:A, 2wq6:A, 2wq7:A
17 5xez:B 499 100 0.0681 0.0521 0.2600 4.7 5xf1:B
18 6wpw:R 398 100 0.0681 0.0653 0.2600 5.3 8fu6:R, 8jiq:R, 8jit:R, 8jiu:R, 6lmk:R, 6lml:R, 7v35:R
19 5yqz:R 558 100 0.0681 0.0466 0.2600 5.3 5xez:A, 5xf1:A
20 1obh:A 762 77 0.0576 0.0289 0.2857 7.6
21 5ee7:A 416 78 0.0524 0.0481 0.2564 9.4
22 2bte:A 876 77 0.0576 0.0251 0.2857 9.5 2bte:D, 2byt:A, 2byt:D, 1h3n:A, 1obc:A, 2v0c:A, 2v0g:A, 2v0g:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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