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BioLiP
>protein
YKEPFGVKLDFETGIIENAKKSVRRLSDMKGYFIDEEAWKKMVEEGDPVVYEVYAIEQEEKEGDLNFATTVLYPGKVGNE
FFMTKGHYHSKIDRAEVYFALKGKGGMLLQTPEGEARFIEMEPGTIVYVPPYWAHRTINTGDKPFIFLALYPADAGHDYG
TIAEKGFSKIVVEENGKVVVKDNPK

The query sequence (length=185) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1j3p:A 187 185 1.0000 0.9893 1.0000 1.71e-135 1j3q:A, 1j3q:B, 1j3r:A, 1j3r:B
2 4lum:A 190 185 0.8324 0.8105 0.8324 1.08e-115 2gc0:A, 2gc0:B, 2gc1:A, 2gc1:B, 2gc2:A, 2gc2:B, 2gc3:A, 2gc3:B, 4lta:A, 4lta:B, 4luk:A, 4lul:A, 4lul:B, 4lum:B, 1qxr:A, 1qxr:B, 1qy4:A, 1qy4:B, 1x7n:A, 1x82:A
3 5vg3:A 382 72 0.1189 0.0576 0.3056 1.27e-04 5hi0:A, 1j58:A, 1l3j:A, 4met:A, 4met:B, 4met:C, 4met:D, 3s0m:A, 6tzp:A, 6ufi:A, 1uw8:A, 2uy8:A, 2uy9:A, 2uya:A, 2uyb:A, 2v09:A, 5vg3:B, 5vg3:C
4 2vqa:A 356 65 0.0919 0.0478 0.2615 0.028 2vqa:B, 2vqa:C
5 2vqa:A 356 102 0.1297 0.0674 0.2353 0.077 2vqa:B, 2vqa:C
6 7zvy:A 112 62 0.0973 0.1607 0.2903 0.12
7 7zvm:A 104 64 0.0919 0.1635 0.2656 0.17
8 8a82:A 354 23 0.0486 0.0254 0.3913 0.25
9 6l9i:A 338 69 0.0973 0.0533 0.2609 0.42 6l9i:B, 6l9i:C, 6l9i:D, 6l9i:E, 6l9i:F
10 5tg0:A 137 68 0.1027 0.1387 0.2794 0.99 6a53:A, 6a53:B, 6a54:A, 6a54:B, 6a55:A, 6a55:B, 8hlf:A, 8hlf:B, 5tfz:A, 5tfz:B
11 8eui:n 361 76 0.1027 0.0526 0.2500 1.3 8eug:n
12 7kyj:B 194 43 0.0865 0.0825 0.3721 3.3 6edd:A, 6edd:B, 6edv:A, 7kpp:A, 7kpp:B, 7kps:A, 7kps:B, 7kye:A, 7kyj:A
13 1jc9:A 220 113 0.1676 0.1409 0.2743 5.3
14 6n3p:D 146 71 0.1351 0.1712 0.3521 6.8 6n3p:A, 6n3p:B, 6n3p:C, 6n3p:E, 6n3p:F
15 4la2:B 192 91 0.1297 0.1250 0.2637 8.2 5jso:A, 5jso:B, 5jsp:A, 5jsp:B, 5jsr:A, 5jsr:B, 4la2:A, 4la3:A, 4la3:B
16 5flh:A 190 106 0.1568 0.1526 0.2736 8.4 5flh:B, 5fli:A, 5fli:B, 5fli:C, 5fli:D, 5fli:E, 5fli:F, 5fli:G, 5fli:H, 5fli:I, 5fli:J, 5fli:K, 5fli:L, 5flj:A, 5flj:B, 5flj:C, 5flj:D, 5flj:E, 5flj:F, 5flj:G, 5flj:H, 5flj:I, 5flj:J, 5flj:K, 5flj:L
17 2d5f:B 385 27 0.0541 0.0260 0.3704 9.7 2d5f:A, 2d5h:A, 2d5h:C, 2d5h:D, 2d5h:E, 2d5h:F, 1od5:A, 1od5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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