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BioLiP
>protein
YIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVQDTEKME
EQLDLLSAILDPSK

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rj1:O 94 94 1.0000 1.0000 1.0000 9.81e-65
2 3lju:X 373 44 0.1702 0.0429 0.3636 0.19 3feh:A, 3fm8:C, 3fm8:D, 3mdb:C, 3mdb:D
3 8h10:A 1026 51 0.1383 0.0127 0.2549 4.1 8h0y:B, 8h0z:A, 8h10:B, 8h10:C, 7zh1:A, 7zh1:B, 7zh1:C, 7zh2:A, 7zh2:B, 7zh2:C
4 8h0z:B 1045 51 0.1383 0.0124 0.2549 4.1 8h0x:A, 8h0x:B, 8h0x:C, 8h0y:A, 8h0y:C, 8h0z:C, 8h14:B, 8h14:C, 8h14:A
5 8tc0:B 1091 51 0.1383 0.0119 0.2549 4.1 8tc0:A, 8tc0:C, 8tc1:C, 8tc1:A, 8tc1:B, 8tc5:C, 8tc5:A, 8tc5:B, 1zv8:A, 1zv8:C, 1zv8:E, 5zvm:A, 5zvm:B
6 1t6c:A 306 70 0.1596 0.0490 0.2143 5.6 2j4r:A
7 6e5v:B 447 29 0.0957 0.0201 0.3103 5.8 6bsz:A, 6bsz:B, 6bt5:A, 6bt5:B, 6e5v:A
8 5bv5:D 327 51 0.1383 0.0398 0.2549 5.8 5bv5:A, 5bv5:C
9 2bam:B 210 35 0.0957 0.0429 0.2571 8.6 2bam:A, 3bam:A, 3bam:B, 1bhm:A, 1bhm:B, 1esg:A
10 8eti:5 340 36 0.1383 0.0382 0.3611 9.3 8eth:5, 8eup:5, 8euy:5, 8ev3:5
11 2w27:A 401 18 0.0957 0.0224 0.5000 9.8 2w27:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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