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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKK
GPQLPPQLGPRLG

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yez:H 93 93 1.0000 1.0000 1.0000 1.12e-62 7dkz:H, 5l8r:H, 3lw5:H, 4rku:H, 4y28:H, 6yac:H, 6zoo:H, 6zxs:H
2 7wfd:AH 95 91 0.8495 0.8316 0.8681 2.63e-54 8j6z:H, 8j7a:H, 8j7b:H, 2o01:H, 7wfe:BH, 7wg5:AH, 2wsc:H, 2wse:H, 2wsf:H
3 4xk8:H 90 87 0.8495 0.8778 0.9080 2.53e-52 4xk8:h
4 8htu:H 95 91 0.6344 0.6211 0.6484 9.17e-41 7ksq:H, 7kux:H, 6l35:H, 7xqp:H
5 5zji:H 95 80 0.7634 0.7474 0.8875 2.90e-35 8bcv:H, 8bcw:H
6 8wgh:H 90 76 0.6774 0.7000 0.8289 1.40e-31
7 6zzx:H 94 91 0.4624 0.4574 0.4725 2.03e-23 6zzy:H
8 7d0j:H 100 90 0.3763 0.3500 0.3889 3.21e-16 7dz7:H, 7dz8:H, 8h2u:H, 6ijo:H
9 7yca:H 96 92 0.4624 0.4479 0.4674 3.85e-16
10 6sl5:H 92 81 0.3763 0.3804 0.4321 6.26e-14
11 6igz:H 88 86 0.3978 0.4205 0.4302 1.08e-12
12 6tq4:A 297 34 0.1505 0.0471 0.4118 0.39 6tq6:A
13 6tp3:A 314 34 0.1505 0.0446 0.4118 0.40 6to7:A, 6to7:B, 6tod:A, 6tod:B, 6tos:A, 6tos:B, 6tot:A, 6tot:B, 6tp3:B, 6tp4:A, 6tp4:B, 6tp6:A, 6tp6:B, 6tq4:B, 6tq6:B, 6tq7:A, 6tq7:B, 6tq9:A, 6tq9:B
14 7xrr:A 309 34 0.1505 0.0453 0.4118 0.42 7l1u:R, 7l1v:R, 7sqo:R, 7sr8:R
15 5why:A 418 64 0.2043 0.0455 0.2969 0.65
16 6v9s:A 503 33 0.1505 0.0278 0.4242 0.67 4zj8:A, 4zjc:A
17 6tpn:A 510 31 0.1398 0.0255 0.4194 0.92 4s0v:A, 6tpg:A, 6tpj:A, 6tpj:B, 5wqc:A, 5ws3:A
18 4x28:A 386 45 0.1828 0.0440 0.3778 4.6 4x28:B
19 5i4e:A 959 21 0.1183 0.0115 0.5238 5.3
20 5t04:A 458 19 0.0968 0.0197 0.4737 6.1 4grv:A
21 7l0b:A 202 27 0.1183 0.0545 0.4074 6.7 7l0b:B, 7l0b:C, 7l0b:D
22 5v1d:D 247 64 0.1935 0.0729 0.2812 7.2 5v1d:C
23 3t4k:A 268 54 0.1183 0.0410 0.2037 9.4 3t4j:A, 3t4j:B, 3t4k:B, 3t4l:A, 3t4l:B, 3t4o:A, 3t4o:B, 3t4q:A, 3t4q:B, 3t4s:A, 3t4s:B, 3t4t:A, 3t4t:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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