Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
YFDLEDIGNTTGQWDLYGSDAPSPYSPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSTTASGDILPIVKGPQLPP
KL

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6yez:H 93 82 0.9268 0.8172 0.9268 2.71e-50 7dkz:H, 5l8r:H, 3lw5:H, 4rku:H, 4y28:H, 6yac:H, 6zoo:H, 6zxs:H
2 4xk8:H 90 82 0.8902 0.8111 0.8902 9.79e-49 4xk8:h
3 7wfd:AH 95 82 0.8293 0.7158 0.8293 2.39e-46 8j6z:H, 8j7a:H, 8j7b:H, 2o01:H, 7wfe:BH, 7wg5:AH, 2wsc:H, 2wse:H, 2wsf:H
4 8htu:H 95 80 0.6098 0.5263 0.6250 3.79e-33 7ksq:H, 7kux:H, 6l35:H, 7xqp:H
5 8wgh:H 90 74 0.7561 0.6889 0.8378 9.82e-31
6 5zji:H 95 74 0.7805 0.6737 0.8649 4.97e-30 8bcv:H, 8bcw:H
7 6zzx:H 94 82 0.4268 0.3723 0.4268 7.61e-18 6zzy:H
8 6sl5:H 92 81 0.4146 0.3696 0.4198 4.90e-14
9 7d0j:H 100 78 0.3780 0.3100 0.3974 5.51e-14 7dz7:H, 7dz8:H, 8h2u:H, 6ijo:H
10 6igz:H 88 78 0.4024 0.3750 0.4231 1.28e-11
11 7yca:H 96 83 0.4146 0.3542 0.4096 2.73e-09
12 8bo1:B 398 84 0.3049 0.0628 0.2976 0.32 8bo1:D, 8br0:B, 8br0:D, 8br1:B, 8br1:D
13 5why:A 418 64 0.2317 0.0455 0.2969 0.60
14 5v1d:A 193 65 0.2683 0.1140 0.3385 9.0

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218