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BioLiP
>protein
YELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAK
LVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA
FAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQ
QAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVMGF

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1npd:B 288 280 1.0000 0.9722 1.0000 0.0 1npd:A, 1o9b:A, 1o9b:B, 3t4e:A, 3t4e:B, 1vi2:A, 1vi2:B
2 3toz:A 291 277 0.4893 0.4708 0.4946 1.43e-104 3tnl:A, 3tnl:B, 3tnl:C, 3tnl:D, 3toz:B, 3toz:C, 3toz:D, 3toz:E, 3toz:F, 3toz:G, 3toz:H
3 2hk9:A 269 269 0.3393 0.3532 0.3532 1.55e-48 2hk9:B, 2hk9:C, 2hk9:D
4 1nvt:A 287 280 0.3571 0.3484 0.3571 1.18e-43 1nvt:B
5 2ev9:B 263 268 0.2893 0.3080 0.3022 5.35e-34 2cy0:A, 2d5c:A, 2d5c:B, 2ev9:A
6 3doo:A 258 276 0.2929 0.3178 0.2971 6.91e-32
7 2o7q:A 501 280 0.3107 0.1737 0.3107 8.86e-29 6bmb:A, 6bmq:A, 2gpt:A, 2o7s:A
8 7col:A 280 285 0.3000 0.3000 0.2947 6.10e-28 7col:B
9 3pgj:A 272 259 0.3000 0.3088 0.3243 2.66e-26 3pgj:B, 3pgj:C, 3pgj:D, 3sef:A, 3sef:B
10 3sef:C 244 257 0.2786 0.3197 0.3035 4.20e-22
11 4k28:A 266 260 0.2607 0.2744 0.2808 2.60e-20 4k28:B
12 1nyt:A 271 290 0.2929 0.3026 0.2828 3.06e-20 1nyt:B, 1nyt:C, 1nyt:D
13 6hqv:A 1555 290 0.3071 0.0553 0.2966 1.54e-17 6hqv:B
14 3jyo:A 282 217 0.2429 0.2411 0.3134 2.55e-17 3jyp:A, 3jyq:A
15 4p4g:A 265 270 0.2857 0.3019 0.2963 9.22e-16 4p4l:A, 4p4l:B, 4p4l:C
16 1p77:A 265 272 0.2607 0.2755 0.2684 1.02e-15
17 4fos:A 263 286 0.2786 0.2966 0.2727 1.69e-14 4fq8:A, 4fq8:B, 4fr5:A, 4fr5:B, 4fsh:A, 3phh:A, 3phi:A, 3phi:B, 3phj:A, 3phj:B
18 7tbv:A 682 292 0.2750 0.1129 0.2637 2.59e-14 7tbv:B, 7tbv:C, 7tbv:D
19 6tlk:A 289 109 0.1250 0.1211 0.3211 0.004 1lua:A, 1lua:B, 1lua:C, 6tge:A, 6tge:C, 6tge:B, 6tge:D, 6tge:F, 6tge:E, 6tge:G, 6tge:I, 6tge:H, 6tge:J, 6tge:L, 6tge:K, 6tge:M, 6tge:O, 6tge:N, 6tge:P, 6tge:R, 6tge:Q, 6tge:S, 6tge:U, 6tge:T, 6tge:V, 6tge:X, 6tge:W, 6tlk:B, 6tlk:C, 6tlk:D, 6tlk:E, 6tlk:F, 6tm3:A
20 5jox:A 502 149 0.1214 0.0677 0.2282 0.36 5jox:B, 5joy:A, 5joy:B
21 3j9w:AL 137 41 0.0500 0.1022 0.3415 0.56 8buu:l, 8cdu:L, 8cdv:L, 8cec:L, 8ced:L, 8cee:L, 6ha1:l, 6ha8:l, 6htq:l, 5njt:L, 7o5b:L, 8qcq:l, 7qgu:q, 7qh4:p, 8qpp:L, 7qv1:l, 7qv2:l, 7qv3:l, 8r55:L
22 6p81:A 440 51 0.0679 0.0432 0.3725 1.6 7az5:A, 7az5:B, 7az5:C, 7az5:D, 7az6:A, 7az7:A, 7az8:A, 7az8:B, 7azc:A, 7azc:C, 7azc:B, 7azc:D, 7azd:A, 7azd:B, 7azd:D, 7azd:C, 7aze:A, 7aze:B, 7azf:A, 7azf:D, 7azf:B, 7azf:C, 7azg:A, 7azg:C, 7azg:B, 7azg:D, 7azg:E, 7azg:G, 7azg:F, 7azg:H, 7azk:A, 7azk:B, 7azk:C, 7azk:D, 7azl:A, 7azl:B, 7azl:C, 7azl:D, 3bep:B, 3bep:A, 8cix:A, 8ciy:A, 8ciz:A, 8ciz:B, 3d1e:A, 3d1f:A, 3d1f:B, 3d1g:A, 3d1g:B, 3f1v:A, 3f1v:B, 6fvl:A, 6fvl:B, 6fvl:C, 6fvl:D, 6fvm:A, 6fvm:B, 5jne:C, 5jne:G, 4k3k:A, 4k3k:B, 4k3l:A, 4k3l:B, 4k3m:A, 4k3m:B, 4k3o:A, 4k3o:B, 4k3p:A, 4k3q:A, 4k3q:B, 4k3r:A, 4k3s:A, 4k74:A, 4k74:B, 5m1s:C, 4mjp:B, 4mjq:A, 4mjq:B, 4mjr:A, 4mjr:B, 4n94:A, 4n94:B, 4n95:A, 4n96:A, 4n96:B, 4n97:A, 4n97:B, 4n98:A, 4n98:B, 4n99:A, 4n99:B, 4n9a:A, 4n9a:B, 1ok7:B, 4ovf:A, 4ovf:B, 4ovg:A, 4ovg:B, 4ovh:A, 8pat:A, 8pay:A, 4pnu:A, 4pnu:B, 4pnv:A, 4pnv:B, 4pnw:A, 4pnw:B, 3q4j:B, 3q4j:C, 3q4j:D, 3q4j:E, 3q4j:F, 3q4k:A, 3q4k:B, 3q4l:A, 3q4l:B, 3qsb:A, 3qsb:B, 3v62:A, 3v62:D, 8var:G
23 4fha:A 307 110 0.0964 0.0879 0.2455 2.1 4fha:B
24 8ouw:3 619 73 0.0714 0.0323 0.2740 2.1
25 5xsf:A 209 84 0.0929 0.1244 0.3095 2.3
26 1wql:A 436 109 0.1179 0.0757 0.3028 2.7
27 7e24:D 251 89 0.0857 0.0956 0.2697 3.2 7e24:A, 7e24:B, 7e24:C, 7e3x:A, 7e3x:B
28 5jz9:A 284 91 0.0786 0.0775 0.2418 4.4 5jz9:B, 5jzb:A, 5jzb:B, 5jzs:B, 2wue:B, 2wuf:B, 2wug:A, 2wug:B, 7zm1:A, 7zm1:B, 7zm2:A, 7zm2:B, 7zm3:A, 7zm3:B, 7zm4:A, 7zm4:B
29 4rzy:A 439 38 0.0393 0.0251 0.2895 5.5 4rzy:B, 4rzy:C, 4rzy:D, 4rzz:A, 4rzz:B, 4rzz:C, 4rzz:D, 4s00:A, 4s00:B, 4s00:C, 4s00:D, 4s01:A, 4s01:B, 4s01:C, 4s01:D
30 8h2a:A 366 82 0.0929 0.0710 0.3171 6.6 8h2a:B, 8h2a:C, 8h2a:D, 8h2a:E, 8h2a:F, 8h2a:G, 8h2a:H
31 1i6u:A 129 31 0.0393 0.0853 0.3548 7.6 1i6u:B
32 8btt:B 484 58 0.0679 0.0393 0.3276 9.0
33 8odp:A 505 58 0.0679 0.0376 0.3276 9.7 8btt:A, 8odo:A, 8odo:C, 8odo:E, 8odo:G, 8odp:C, 8odp:E, 8odp:G, 7p3b:A, 7p3b:B
34 4b28:A 437 37 0.0393 0.0252 0.2973 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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