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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YCPARGDVILLDFNPKRPALVVSDDLFNQVTGFAVVCPITNQIKGYPFEVPVDGTTKTTGVILADQVKSLDWKARAARTV
DSVSGETVTTVVDMVSKIIK

The query sequence (length=100) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7bye:B 108 108 1.0000 0.9259 0.9259 1.25e-66 7bye:C, 7bye:E
2 7bye:F 98 100 0.9700 0.9898 0.9700 2.42e-64
3 7d2m:B 112 107 0.3800 0.3393 0.3551 6.15e-22
4 5cqx:B 116 107 0.4300 0.3707 0.4019 8.30e-20 5cqx:A, 5cqy:A, 5cqy:B, 5cr2:A, 5cr2:B, 5cr2:C
5 2c06:A 110 107 0.3500 0.3182 0.3271 1.33e-10 2c06:B
6 7du5:B 118 79 0.3000 0.2542 0.3797 3.38e-05 7du5:A, 5hjz:A, 5hjz:B
7 4mdx:A 115 100 0.3000 0.2609 0.3000 4.77e-05 4mdx:B
8 7ezx:d4 297 42 0.1300 0.0438 0.3095 1.8 7ezx:dD, 6kgx:d9, 6kgx:dJ, 7y4l:d5, 7y4l:dJ, 7y5e:dD, 7y5e:dQ, 7y7a:d2, 7y7a:dc, 7y7a:dF, 7y7a:dM
9 1bxr:A 1073 58 0.1500 0.0140 0.2586 2.8 1a9x:A, 1a9x:C, 1a9x:E, 1a9x:G, 1bxr:C, 1bxr:E, 1bxr:G, 1c30:A, 1c30:C, 1c30:E, 1c30:G, 1c3o:A, 1c3o:C, 1c3o:E, 1c3o:G, 1ce8:A, 1ce8:C, 1ce8:E, 1ce8:G, 1cs0:A, 1cs0:C, 1cs0:E, 1cs0:G, 1jdb:B, 1jdb:E, 1jdb:H, 1jdb:K, 1kee:A, 1kee:C, 1kee:E, 1kee:G, 1m6v:A, 1m6v:C, 1m6v:E, 1m6v:G, 1t36:A, 1t36:C, 1t36:E, 1t36:G
10 2qpz:A 103 24 0.1000 0.0971 0.4167 4.4
11 2byo:A 183 29 0.1600 0.0874 0.5517 4.8
12 8hfr:CW 427 39 0.1200 0.0281 0.3077 5.6 8hfr:EX, 4wwu:B, 4wwu:E, 4wwu:G
13 3nok:A 234 67 0.1900 0.0812 0.2836 6.3 3nok:B
14 7k3z:A 564 39 0.1100 0.0195 0.2821 9.2 7k3z:B, 7k3z:C, 7k3z:D, 7k3z:E, 7k3z:F, 7k3z:G
15 5bok:A 102 24 0.1000 0.0980 0.4167 9.7
16 4z7u:B 169 38 0.1200 0.0710 0.3158 9.9 4gg6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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