Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGYD
LPEKLPESLMPK

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1fi6:A 92 92 1.0000 1.0000 1.0000 7.83e-66
2 1iq3:A 110 92 0.7283 0.6091 0.7283 3.83e-46
3 3fia:A 98 86 0.3804 0.3571 0.4070 2.54e-17
4 2jq6:A 139 89 0.4022 0.2662 0.4157 2.98e-16 2kff:A, 2kfg:A, 2kfh:A, 2ksp:A
5 6yet:A 104 82 0.3587 0.3173 0.4024 4.20e-16
6 1eh2:A 95 91 0.3804 0.3684 0.3846 5.08e-16 1f8h:A, 1ff1:A, 2jxc:A
7 4cid:A 497 91 0.3913 0.0724 0.3956 5.73e-14 2qpt:A
8 1c07:A 95 92 0.3370 0.3263 0.3370 1.22e-13
9 6yeu:A 107 76 0.2935 0.2523 0.3553 5.02e-05 6yig:A
10 5joj:A 97 74 0.2174 0.2062 0.2703 1.50e-04
11 2f2p:A 169 64 0.1957 0.1065 0.2812 0.012 2f2o:B, 2f2p:B
12 1rfj:A 148 54 0.1848 0.1149 0.3148 0.037 5a2h:A, 4aqr:A, 4aqr:B, 2ro9:A
13 5ve9:B 91 58 0.2065 0.2088 0.3276 0.065 5ve9:A
14 7wbo:A 193 25 0.1413 0.0674 0.5200 0.085
15 1rro:A 108 61 0.1957 0.1667 0.2951 0.29 1omd:A
16 1jfk:A 134 82 0.2717 0.1866 0.3049 0.31 3li6:A, 3li6:D, 3li6:G, 3li6:J, 2m7m:A, 2m7n:A, 2nxq:A, 2nxq:B, 3ulg:A, 3ulg:B, 5xop:A, 5xop:B, 5xop:C, 5xop:D, 5xop:E, 5xop:F
17 4uhf:A 278 38 0.1739 0.0576 0.4211 0.35 4uhd:A, 4uhe:A
18 5ukg:A 393 67 0.1848 0.0433 0.2537 0.41 5ukg:B
19 3wy1:A 535 23 0.1087 0.0187 0.4348 0.48 3wy1:B, 3wy2:A, 3wy2:B, 3wy3:A, 3wy3:B, 3wy4:A
20 3wy4:B 421 23 0.1087 0.0238 0.4348 0.59
21 1s6i:A 182 60 0.2174 0.1099 0.3333 1.2
22 8slv:A 562 23 0.1087 0.0178 0.4348 1.3
23 6k5p:A 531 23 0.1087 0.0188 0.4348 1.4 6k5p:B, 6k5p:C, 6k5p:D
24 1s6j:A 87 56 0.1957 0.2069 0.3214 1.6
25 5x2e:A 80 61 0.1630 0.1875 0.2459 1.6
26 2c39:D 248 42 0.1304 0.0484 0.2857 1.7 4ba1:B, 4ba2:B, 2c37:B, 2c37:F, 2c37:N, 2c37:V, 2c37:X, 2c38:B, 2c38:F, 2c38:H, 2c38:J, 2c38:N, 2c38:V, 2c38:X, 2c39:B, 2c39:F, 2c39:H, 2c39:J, 2c39:L, 2c39:N, 2c39:P, 2c39:R, 2c39:T, 2c39:V, 2c39:X, 2jea:B
27 3p9t:A 213 40 0.1739 0.0751 0.4000 1.8
28 4io0:A 288 41 0.1630 0.0521 0.3659 1.9 4io0:B, 4o08:A, 4o08:B
29 5m3f:A 1459 31 0.1522 0.0096 0.4516 1.9 5n61:A
30 5g5l:A 1480 31 0.1522 0.0095 0.4516 1.9 6h67:A, 6h68:A, 5m3m:A, 5m5y:A, 5m64:A, 5n5y:A, 5n5z:A, 5n60:A, 6rqt:A, 6rrd:A, 6rui:A, 6ruo:A, 6rwe:A, 6tps:A
31 4wlc:A 536 23 0.1196 0.0205 0.4783 2.0 4xb3:A, 2zic:A, 2zid:A
32 5m5w:A 1493 31 0.1522 0.0094 0.4516 2.0 4c3i:A, 4ym7:AA, 4ym7:CA, 4ym7:DA, 4ym7:EA, 4ym7:FA
33 2ze0:A 531 23 0.1087 0.0188 0.4348 2.0
34 4i2y:A 381 53 0.1630 0.0394 0.2830 2.1 4i2y:B
35 2c59:A 364 24 0.1304 0.0330 0.5000 2.4 2c54:A, 2c54:B, 2c59:B, 2c5a:A, 2c5a:B, 2c5e:A, 2c5e:B, 8sg0:A, 8sg0:B, 8skb:A, 8skb:B, 8skb:C, 8skb:D
36 2r2i:A 184 32 0.1304 0.0652 0.3750 2.9
37 5xnd:A 110 72 0.2500 0.2091 0.3194 3.0
38 4how:A 559 23 0.1196 0.0197 0.4783 3.0 4hox:A, 4hoz:A, 4hp5:A, 4hph:A
39 4lxf:B 546 23 0.1087 0.0183 0.4348 3.1
40 1omr:A 201 35 0.1196 0.0547 0.3143 3.1 2het:A, 2het:B, 2het:C, 2het:D, 2i94:A, 1jsa:A, 1la3:A, 4m2o:A, 4m2p:A, 4m2q:A, 4mlw:A, 1omv:A, 1rec:A, 4yi8:A, 4yi9:A
41 8uzh:B 626 23 0.1087 0.0160 0.4348 3.2 4lxf:A, 8uqv:A, 8uqv:B, 8uqv:C, 8uqv:D, 8uzh:A
42 1fpw:A 190 52 0.1957 0.0947 0.3462 3.2 2ju0:A
43 1fpw:A 190 25 0.1196 0.0579 0.4400 4.2 2ju0:A
44 6gez:B 532 67 0.1957 0.0338 0.2687 3.8 6gel:A, 6gel:B, 6gez:A
45 5jy7:B 571 23 0.1087 0.0175 0.4348 4.0 5jy7:A, 5jy7:C, 5jy7:D, 5jy7:E, 5jy7:F, 5jy7:G, 5jy7:H, 3zo9:A, 3zo9:B, 3zoa:B, 3zoa:A
46 8ibk:A 546 23 0.0978 0.0165 0.3913 4.7 8ids:A, 5zcb:A, 5zcc:A, 5zcd:A, 5zce:A
47 6e0x:B 161 81 0.2609 0.1491 0.2963 5.2 6amg:A, 6amg:B, 6e0x:A, 6e0x:D, 6e0x:C, 6e0y:A, 6e0y:B, 6e0y:C, 6e0y:D, 6e0z:A, 6e0z:B, 6e0z:C, 6e0z:D, 6e17:A, 6e17:B, 6e17:C, 6e17:D, 6w6n:A, 6w6n:B
48 4y5q:A 449 71 0.2283 0.0468 0.2958 5.5 9d8s:A, 3igo:A, 3mwu:A, 3ncg:A, 2wei:A
49 2l4h:A 184 21 0.1087 0.0543 0.4762 5.6 2l4i:A, 2lm5:A, 6ocx:D, 6ocx:C, 6ocx:A, 6ocx:B, 6od0:A, 6od0:B, 1xo5:A, 1xo5:B, 1y1a:A, 1y1a:B
50 5ykb:D 523 23 0.0978 0.0172 0.3913 5.8 5ykb:B
51 4aie:A 537 23 0.1196 0.0205 0.4783 5.8
52 3jvt:C 156 49 0.1522 0.0897 0.2857 5.8 1b7t:Z, 1dfk:Z, 1dfl:Z, 1dfl:X, 2ec6:C, 1kk7:Z, 1kk8:C, 1kqm:C, 1kwo:C, 1l2o:C, 2os8:C, 2otg:C, 3pn7:C, 3pn7:F, 1qvi:Z, 1s5g:Z, 1scm:C, 1sr6:C, 3ts5:C, 3ts5:F, 3tuy:C, 3tuy:F, 1wdc:C
53 9ezl:A 548 23 0.0978 0.0164 0.3913 6.0 9ezl:B, 9ezl:C, 9ezl:D, 9ezl:E, 9ezl:F, 9ezl:G, 9ezl:H, 5gtw:A, 5gtw:B, 5gtw:C, 5gtw:D, 4tvu:A, 4tvu:B, 4tvu:C, 4tvu:D, 4tvu:E, 4tvu:F, 4tvu:G, 4tvu:H, 4wf7:A, 4wf7:B, 4wf7:C, 4wf7:D, 5ykb:A, 5ykb:C
54 3khe:B 191 36 0.1304 0.0628 0.3333 6.0 3khe:A
55 1fui:A 591 22 0.0978 0.0152 0.4091 6.0 1fui:B, 1fui:C, 1fui:D, 1fui:E, 1fui:F, 6k1f:A, 6k1f:B, 6k1f:C, 6k1f:D, 6k1f:E, 6k1f:F, 6k1g:A, 6k1g:B, 6k1g:C, 6k1g:D, 6k1g:E, 6k1g:F
56 2pmy:A 73 55 0.1304 0.1644 0.2182 6.1 2pmy:B
57 6ub6:A 252 31 0.1087 0.0397 0.3226 6.7 6ub3:A, 6ub3:B, 6ub4:A, 6ub4:B, 6ub5:A
58 8c0t:A 281 56 0.2065 0.0676 0.3393 7.2
59 3gbe:A 558 23 0.1087 0.0179 0.4348 7.3
60 4r9f:A 402 29 0.1087 0.0249 0.3448 7.6 4r9g:A, 4r9g:B
61 7p01:A 572 23 0.0978 0.0157 0.3913 9.2 7p01:B, 7p07:A, 7p07:B
62 7kgz:B 634 18 0.0978 0.0142 0.5000 9.2 7kgz:A
63 7clt:A 102 64 0.2283 0.2059 0.3281 9.3 7ygv:A, 7ygw:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218